Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq10 96.9 3e-15
>seq10
Length=65527505
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| ||| | || || ||||| ||||| || |||||| || |||| | |
Sbjct 1071808 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 1071749
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | | | ||| || ||| || ||||| ||| | || ||| ||
Sbjct 1071748 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 1071689
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
||||| | || ||||| ||||| || |||||||| | || | |||||||||||
Sbjct 1071688 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 1071629
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173
||||||||||||||| || ||||| | |||||
Sbjct 1071628 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 1071596
Score = 93.3 bits (102), Expect = 4e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||||||||| | || ||||| || ||||| || ||||| || |||||| |||||
Sbjct 463934 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTGGAA 463875
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
||| | ||| |||| |||||||| |||||||| ||||| |||||||||
Sbjct 463874 GATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 463824
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | ||||| ||||| || || ||||| ||| || ||| | |
Sbjct 1072491 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 1072432
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| || || || || ||||| | ||| ||| ||
Sbjct 1072431 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1072372
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
||||| | |||||||||||||| || || || || || || | || ||||||||
Sbjct 1072371 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 1072312
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171
|| ||||||||||| || |||||| |||||
Sbjct 1072311 ATCCAGAAGGAATCAACCCTTCACTTGGTG 1072282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428319582014975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |