Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq1141 203 7e-48 >seq1141 Length=3271 Score = 203 bits (224), Expect = 7e-48 Identities = 579/867 (67%), Gaps = 26/867 (3%) Strand=Plus/Minus Query 1705 GCCAGTACCACGCATC-CGGCGCTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1759 |||| ||||| || | |||| |||||||||| | || ||||||||| || | || Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213 Query 1760 ATACCGGGCGGGAGCCGAACGGATTGG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1818 ||||| || ||||| || || || | || |||| | |||| ||||| | ||| Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154 Query 1819 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTC 1877 ||| |||||||||||| ||| ||| | | |||||| || || ||| |||| || Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095 Query 1878 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTG 1937 | || | ||||| | |||||| | || || | |||||| || | | ||| Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035 Query 1938 CTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCG 1997 || | ||||||||| ||||||| || | |||||| || | |||||||||||| Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975 Query 1998 CCACTGGCCGTCCGCACAGAGAAGCCCA-CCGGCAAGGGCGTTATGACTGACGTCGATTT 2056 |||||| |||||||| || | | || || ||||| || || |||||||| | Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916 Query 2057 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGT 2116 | | | || | || ||| || || || ||||| | || ||||||||||||| Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859 Query 2117 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 2176 | || ||||| || || | || || || |||||||| ||| ||| | || Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799 Query 2177 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCAT 2236 |||||| || || |||||||| ||||| | || || | |||||||||| ||| | Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739 Query 2237 CGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2296 | | || |||| ||||| || |||||||||||| | ||| |||||||| ||| || Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679 Query 2297 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAAC--CAG 2354 | | |||||||| || || ||||| || || |||| || ||| | | || Sbjct 2678 GCGTCGCGCCGTTCGG---CAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622 Query 2355 ACGG-GCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACA 2413 | || || ||||||||||| ||| || | ||||| | || |||||||||| Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562 Query 2414 GAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAA 2473 |||||||| || | || || ||| ||| | | ||||| || | ||||| Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502 Query 2474 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTC-AAGCCCGGCA 2532 |||| || || ||||||||| ||||| | || |||||| || | ||| || || || Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCT-CTCTGAGACCCGCT 2443 Query 2533 CGATACCAGTGCA-GCTGATAGTCGAA 2558 |||||| ||| |||| |||||||| Sbjct 2442 TCGTACCAG-GCACGCTGGTAGTCGAA 2417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107371989841950