Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_001895.1
Length=33593
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 203 7e-48
>seq1141
Length=3271
Score = 203 bits (224), Expect = 7e-48
Identities = 579/867 (67%), Gaps = 26/867 (3%)
Strand=Plus/Minus
Query 1705 GCCAGTACCACGCATC-CGGCGCTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1759
|||| ||||| || | |||| |||||||||| | || ||||||||| || | ||
Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213
Query 1760 ATACCGGGCGGGAGCCGAACGGATTGG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1818
||||| || ||||| || || || | || |||| | |||| ||||| | |||
Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154
Query 1819 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTC 1877
||| |||||||||||| ||| ||| | | |||||| || || ||| |||| ||
Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095
Query 1878 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTG 1937
| || | ||||| | |||||| | || || | |||||| || | | |||
Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035
Query 1938 CTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCG 1997
|| | ||||||||| ||||||| || | |||||| || | ||||||||||||
Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975
Query 1998 CCACTGGCCGTCCGCACAGAGAAGCCCA-CCGGCAAGGGCGTTATGACTGACGTCGATTT 2056
|||||| |||||||| || | | || || ||||| || || |||||||| |
Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916
Query 2057 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGT 2116
| | | || | || ||| || || || ||||| | || |||||||||||||
Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859
Query 2117 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 2176
| || ||||| || || | || || || |||||||| ||| ||| | ||
Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799
Query 2177 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCAT 2236
|||||| || || |||||||| ||||| | || || | |||||||||| ||| |
Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739
Query 2237 CGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2296
| | || |||| ||||| || |||||||||||| | ||| |||||||| ||| ||
Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679
Query 2297 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAAC--CAG 2354
| | |||||||| || || ||||| || || |||| || ||| | | ||
Sbjct 2678 GCGTCGCGCCGTTCGG---CAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622
Query 2355 ACGG-GCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACA 2413
| || || ||||||||||| ||| || | ||||| | || ||||||||||
Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562
Query 2414 GAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAA 2473
|||||||| || | || || ||| ||| | | ||||| || | |||||
Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502
Query 2474 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTC-AAGCCCGGCA 2532
|||| || || ||||||||| ||||| | || |||||| || | ||| || || ||
Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCT-CTCTGAGACCCGCT 2443
Query 2533 CGATACCAGTGCA-GCTGATAGTCGAA 2558
|||||| ||| |||| ||||||||
Sbjct 2442 TCGTACCAG-GCACGCTGGTAGTCGAA 2417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107371989841950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |