Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq11 113 7e-20 seq10 105 1e-17 seq7 104 4e-17 >seq11 Length=56302525 Score = 113 bits (124), Expect = 7e-20 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 497077 -GATACTATCGACAATGTTAAAGCA-AAGATACAAGACAAGGAGGGTATTCCTCCAGACC 497134 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | |||||| | Sbjct 497135 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 497194 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 497195 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 497254 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || || || ||||||||| | ||| | || ||| | Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | ||| ||||||||||| || |||||||| || || || || Sbjct 496621 -GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 496679 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| || Sbjct 496680 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAA 496739 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || | || | || | || |||||||| Sbjct 496740 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 496790 >seq10 Length=65527505 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| ||||||||||| Sbjct 463937 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTG 463878 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| || |||| | | ||||| || ||||| |||||||||||| Sbjct 463877 GAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACT 463830 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| || || || | ||| | ||| | Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 1071975 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 1071916 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| ||| | ||||| | || || | | ||||| || Sbjct 1071915 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAAC 1071856 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | |||||||| || Sbjct 1071855 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 1071806 Score = 100 bits (110), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA- 124592 |||| ||||| |||||| | || || || || || || ||||| || | ||| | ||| Sbjct 1072724 TACAGATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAA 1072665 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || | || || ||| ||| | ||| || || || || || ||||| || || || Sbjct 1072664 GCTCA-GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCA 1072606 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 || || || ||||| || ||||||||||| || | || || |||| || ||| ||| Sbjct 1072605 GACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGAT 1072546 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || || ||||| ||||| |||||| | || ||||| | ||| | || ||||| || || Sbjct 1072545 TACAACATTCAGAAAGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGCATGCAA 1072486 Query 124773 AATT 124776 | || Sbjct 1072485 ATTT 1072482 >seq7 Length=68045021 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| || ||||| | ||| | Sbjct 66406117 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 66406176 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || || || ||||| ||||| || || || ||||| Sbjct 66406177 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 66406236 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| ||||| || Sbjct 66406237 CAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 66406296 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| |||||||| Sbjct 66406297 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 66406346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755426301136000