Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq11 113 7e-20
seq10 105 1e-17
seq7 104 4e-17
>seq11
Length=56302525
Score = 113 bits (124), Expect = 7e-20
Identities = 172/240 (72%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || |
Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||| || ||| ||||| || || || ||||| || || ||||| || || || |
Sbjct 497077 -GATACTATCGACAATGTTAAAGCA-AAGATACAAGACAAGGAGGGTATTCCTCCAGACC 497134
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || || | || ||||| ||||| ||| | |||||| | | || || | |||||| |
Sbjct 497135 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 497194
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
| ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| ||
Sbjct 497195 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 497254
Score = 104 bits (114), Expect = 4e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | || || || || || || ||||||||| | ||| | || ||| |
Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || |||| | ||| ||||||||||| || |||||||| || || || ||
Sbjct 496621 -GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 496679
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| ||
Sbjct 496680 GCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAA 496739
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || || || | || | || | || | || ||||||||
Sbjct 496740 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 496790
>seq10
Length=65527505
Score = 105 bits (116), Expect = 1e-17
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| ||||||||||| ||||| |||||||| || || || |||||||| |||||||||||
Sbjct 463937 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAATTG 463878
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736
|| ||| || |||| | | ||||| || ||||| ||||||||||||
Sbjct 463877 GAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACT 463830
Score = 100 bits (110), Expect = 4e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| | || ||||| || || || | ||| | ||| |
Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || |||||||| || ||||||||||| ||||| || ||
Sbjct 1071975 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 1071916
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| ||||| ||| | ||||| | || || | | ||||| ||
Sbjct 1071915 CAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTACAAC 1071856
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || ||||| | || ||||| | ||| | |||||||| ||
Sbjct 1071855 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 1071806
Score = 100 bits (110), Expect = 4e-16
Identities = 171/244 (70%), Gaps = 3/244 (1%)
Strand=Plus/Minus
Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA- 124592
|||| ||||| |||||| | || || || || || || ||||| || | ||| | |||
Sbjct 1072724 TACAGATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAA 1072665
Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652
|| | || || ||| ||| | ||| || || || || || ||||| || || ||
Sbjct 1072664 GCTCA-GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCA 1072606
Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712
|| || || ||||| || ||||||||||| || | || || |||| || ||| |||
Sbjct 1072605 GACCAGCAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCTAGCTGAT 1072546
Query 124713 TATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772
|| || ||||| ||||| |||||| | || ||||| | ||| | || ||||| || ||
Sbjct 1072545 TACAACATTCAGAAAGAGTCAACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGCATGCAA 1072486
Query 124773 AATT 124776
| ||
Sbjct 1072485 ATTT 1072482
>seq7
Length=68045021
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || || ||||| || ||||| | ||| |
Sbjct 66406117 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 66406176
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| || | || || || || ||||| ||||| || || || |||||
Sbjct 66406177 GATACAATCGACAACGTTAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAG 66406236
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| || || ||||| || || ||||| | || || ||| ||||| ||
Sbjct 66406237 CAAAGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 66406296
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | |||||||| | ||| |||| ||||||||
Sbjct 66406297 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 66406346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755426301136000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |