Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 >seq2 Length=55340444 Score = 136 bits (150), Expect = 4e-27 Identities = 560/872 (64%), Gaps = 27/872 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 54782093 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 54782034 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CA 16047 | ||| ||| ||||| |||| || ||||| | || || | ||| | | | || Sbjct 54782033 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCT--GAGCATT-GTACATCTTGTCA 54781977 Query 16048 T--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| ||||| || || ||||| ||||| || | |||| ||||| Sbjct 54781976 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 54781917 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | |||||||| | | | ||| | || || | || | ||||||| | Sbjct 54781916 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 54781857 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTG 16221 || || || | || | || ||| | || | ||| | | ||| || Sbjct 54781856 ACAGCATCTGCAACAATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACT 54781798 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || || ||| ||||||||||| ||||| |||||||| || |||||||| || Sbjct 54781797 GTAAAGCAA---ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 54781741 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| || || | || ||||||| || |||||||| | ||||||||| | || || Sbjct 54781740 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG----AACAGA 54781685 Query 16342 A----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | || ||||| || |||||||| ||||| || ||||| ||||| || | | Sbjct 54781684 AGCTTCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAG 54781625 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 || | | || ||||| ||||| || || || | || |||||| | Sbjct 54781624 TT---TCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGA 54781568 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | |||| |||||| || || | | ||||| | ||| || || | || | Sbjct 54781567 TTGTCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCA 54781508 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576 || ||||| ||||| || ||||| |||||||| || || || || || ||||| |||| Sbjct 54781507 ACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAG 54781448 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | ||| |||| | || || || |||||| | || | ||| || ||| Sbjct 54781447 CA-CGAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACG 54781389 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || || || || |||||||| ||||| | || | || |||| |||| | Sbjct 54781388 ATGCCGTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGAT 54781329 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 | || ||| ||||| | | ||| | || | |||||| |||||| | ||||| ||| Sbjct 54781328 GTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAA 54781269 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || || | || || || ||||||| ||| || Sbjct 54781268 GATGCCATGGCTTTCTTGTACATTTCCCAAAT 54781237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493817497000