Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 4e-27
>seq2
Length=55340444
Score = 136 bits (150), Expect = 4e-27
Identities = 560/872 (64%), Gaps = 27/872 (3%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || |||
Sbjct 54782093 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 54782034
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CA 16047
| ||| ||| ||||| |||| || ||||| | || || | ||| | | | ||
Sbjct 54782033 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCT--GAGCATT-GTACATCTTGTCA 54781977
Query 16048 T--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105
| ||||| | ||| ||||| || || ||||| ||||| || | |||| |||||
Sbjct 54781976 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 54781917
Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165
| |||||||| | | | ||| | || || | || | ||||||| |
Sbjct 54781916 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 54781857
Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTG 16221
|| || || | || | || ||| | || | ||| | | ||| ||
Sbjct 54781856 ACAGCATCTGCAACAATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACT 54781798
Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281
| || || ||| ||||||||||| ||||| |||||||| || |||||||| ||
Sbjct 54781797 GTAAAGCAA---ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 54781741
Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341
||| || || | || ||||||| || |||||||| | ||||||||| | || ||
Sbjct 54781740 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG----AACAGA 54781685
Query 16342 A----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397
| || ||||| || |||||||| ||||| || ||||| ||||| || | |
Sbjct 54781684 AGCTTCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAG 54781625
Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457
|| | | || ||||| ||||| || || || | || |||||| |
Sbjct 54781624 TT---TCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGA 54781568
Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517
| |||| |||||| || || | | ||||| | ||| || || | || |
Sbjct 54781567 TTGTCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCA 54781508
Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576
|| ||||| ||||| || ||||| |||||||| || || || || || ||||| ||||
Sbjct 54781507 ACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAG 54781448
Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636
|| | ||| |||| | || || || |||||| | || | ||| || |||
Sbjct 54781447 CA-CGAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACG 54781389
Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696
|| || || || |||||||| ||||| | || | || |||| |||| |
Sbjct 54781388 ATGCCGTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGAT 54781329
Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756
| || ||| ||||| | | ||| | || | |||||| |||||| | ||||| |||
Sbjct 54781328 GTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAA 54781269
Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788
|| || | || || || ||||||| ||| ||
Sbjct 54781268 GATGCCATGGCTTTCTTGTACATTTCCCAAAT 54781237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462493817497000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |