Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 129 5e-25 seq12 122 7e-23 seq11 118 8e-22 seq7 107 2e-18 >seq10 Length=65527505 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||| || || || |||| || Sbjct 1071827 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCCTCA 1071886 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| |||||||| || ||||||| ||| ||||| || || | ||| || |||||| | Sbjct 1071887 AGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 1071946 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| |||||| | | | |||| || |||||||| | ||| || |||||| Sbjct 1071947 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 1072006 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||||||||| Sbjct 1072007 CCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||| ||| | | | | || |||| || || || || || Sbjct 1071617 TCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAA 1071676 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| || ||||| || || | |||||| |||||| ||| || ||| || Sbjct 1071677 ATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTG 1071736 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | |||||||| | |||||| |||||||| |||| |||||||| Sbjct 1071737 TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACG 1071796 Query 45326 AAGATTTGCAT 45336 ||||||||||| Sbjct 1071797 AAGATTTGCAT 1071807 >seq12 Length=67145203 Score = 122 bits (134), Expect = 7e-23 Identities = 154/211 (73%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188 ||| || ||| ||||||||| ||||||||||| || | ||| ||| || || | Sbjct 66287164 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCGA 66287219 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || |||||||| ||||| ||||| ||||| || || | || |||||||| || Sbjct 66287220 GCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAA 66287279 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | |||| ||| ||||||| |||||| ||||||| Sbjct 66287280 TCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGC 66287339 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||||||||| ||||| || Sbjct 66287340 CCGTCAGGGTCTTCACAAAGATCTGCATTTT 66287370 Score = 113 bits (124), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188 ||| || ||| |||||||| ||||||||||| || | ||| ||| || || | Sbjct 66338179 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCAA 66338124 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| ||||| ||||||| ||| ||||| || || | || ||||||||| || Sbjct 66338123 GCTGCTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAA 66338064 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | | ||| ||| ||||| | |||||| ||||||| Sbjct 66338063 TCTTAGCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGC 66338004 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || |||||||||||||| ||||| || Sbjct 66338003 CCGTTAGGGTCTTCACAAAGATCTGCATTTT 66337973 >seq11 Length=56302525 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||| || || || ||||||||| ||||||||||| Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| || |||||||| || || || ||||| ||||||||||| || || Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| || || | | | | || || ||| ||| Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497292 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| ||||| || |||| |||||| ||||| ||||||||| Sbjct 497291 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | || |||| || || || ||||||||| ||||||||||| Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || || |||||||| || || || ||||| ||||||||||| || || Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| ||| || || | | | | || || ||| ||| Sbjct 497579 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497520 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||||||||||||| ||||| Sbjct 497519 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | || | |||||| || || |||||||||||||| || Sbjct 497244 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 497185 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | | || || ||||| ||||| || || ||||| | ||| ||||| ||||| Sbjct 497184 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 497125 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || ||| ||||| | | | || || ||| || Sbjct 497124 AATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAAC 497065 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 497064 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 497016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| || |||||||| || ||| || | || || || || Sbjct 496764 GTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 496705 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || |||| || ||| ||||| || || | ||| |||||||| |||||| Sbjct 496704 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT 496645 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| | ||| ||||| | || || ||||| || || Sbjct 496644 AGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGT 496585 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || |||||||||||||| Sbjct 496584 CAGAGTTTTAACAAAGATTTGCAT 496561 >seq7 Length=68045021 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||||||||| || |||||||| || ||| | || || || || Sbjct 66407460 GTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG 66407401 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| ||||| || || | |||||||||||| ||| || Sbjct 66407400 CTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 66407341 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | |||| || ||||||||||| || || ||||| || || Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 66407281 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 66407280 CAAGGTCTTCACAAAGATCTGCAT 66407257 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 66406553 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 66406494 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| || || ||||||| ||| ||||| || || | || ||||| ||| Sbjct 66406493 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 66406434 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || ||||| | |||||||||||| Sbjct 66406433 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 66406374 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| ||||| ||||| Sbjct 66406373 CCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| |||| || || || || || ||||| Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| | ||| | |||||||||||| || || |||||| Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || || ||||| || || || ||||| || Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 66406812 AAAAATCTGCAT 66406801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | ||||||||||| || |||||| || ||||| ||||| | Sbjct 66407255 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCC 66407196 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || || || || ||||||| ||| ||||| || || Sbjct 66407195 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 66407136 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | ||| ||| Sbjct 66407135 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 66407076 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || || || || || |||||||||||||||||||| Sbjct 66407075 TCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| ||| |||| | || || || || ||||| ||||| Sbjct 66406764 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 66406705 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | || ||||| ||| || || ||| || Sbjct 66406704 GATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTT 66406645 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || || ||||| || || |||||||| || Sbjct 66406644 GTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAAC 66406585 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 66406584 GAAGATCTGCAT 66406573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060056891045