Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq10 129 5e-25
seq12 122 7e-23
seq11 118 8e-22
seq7 107 2e-18
>seq10
Length=65527505
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| || || || |||| ||
Sbjct 1071827 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCCTCA 1071886
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| |||||||| || ||||||| ||| ||||| || || | ||| || |||||| |
Sbjct 1071887 AGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 1071946
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| |||||| | | | |||| || |||||||| | ||| || ||||||
Sbjct 1071947 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 1072006
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||||||||||||||||||
Sbjct 1072007 CCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||||||||| ||||| ||| | | | | || |||| || || || || ||
Sbjct 1071617 TCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAA 1071676
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||||| || ||||| || || | |||||| |||||| ||| || ||| ||
Sbjct 1071677 ATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTG 1071736
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | |||||||| | |||||| |||||||| |||| ||||||||
Sbjct 1071737 TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACG 1071796
Query 45326 AAGATTTGCAT 45336
|||||||||||
Sbjct 1071797 AAGATTTGCAT 1071807
>seq12
Length=67145203
Score = 122 bits (134), Expect = 7e-23
Identities = 154/211 (73%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188
||| || ||| ||||||||| ||||||||||| || | ||| ||| || || |
Sbjct 66287164 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCGA 66287219
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || |||||||| ||||| ||||| ||||| || || | || |||||||| ||
Sbjct 66287220 GCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAA 66287279
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || |||||| | | | |||| ||| ||||||| |||||| |||||||
Sbjct 66287280 TCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGC 66287339
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
||||||| |||||||||||||| ||||| ||
Sbjct 66287340 CCGTCAGGGTCTTCACAAAGATCTGCATTTT 66287370
Score = 113 bits (124), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188
||| || ||| |||||||| ||||||||||| || | ||| ||| || || |
Sbjct 66338179 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCAA 66338124
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || ||||| ||||| ||||||| ||| ||||| || || | || ||||||||| ||
Sbjct 66338123 GCTGCTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAA 66338064
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || |||||| | | | | ||| ||| ||||| | |||||| |||||||
Sbjct 66338063 TCTTAGCCTTAACATTGTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGC 66338004
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|||| || |||||||||||||| ||||| ||
Sbjct 66338003 CCGTTAGGGTCTTCACAAAGATCTGCATTTT 66337973
>seq11
Length=56302525
Score = 118 bits (130), Expect = 8e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||||||| | || |||| || || || ||||||||| |||||||||||
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | |||| || |||||||| || || || ||||| ||||||||||| || ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| ||| ||| || || | | | | || || ||| |||
Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497292
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| ||||| ||||| || |||| |||||| ||||| |||||||||
Sbjct 497291 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||||||| | || |||| || || || ||||||||| |||||||||||
Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | | || || |||||||| || || || ||||| ||||||||||| || ||
Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| ||| ||| || || | | | | || || ||| |||
Sbjct 497579 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497520
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || ||||| || |||| ||||||||||||||| |||||
Sbjct 497519 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||||||||| | | | || | |||||| || || |||||||||||||| ||
Sbjct 497244 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 497185
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | | || || ||||| ||||| || || ||||| | ||| ||||| |||||
Sbjct 497184 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 497125
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || ||| ||||| | | | || || ||| ||
Sbjct 497124 AATACCCTCCTTGTCTTGTATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAAC 497065
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| ||||| ||||| || |||| ||||| ||||| |||||||||
Sbjct 497064 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 497016
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||| || |||||||| || ||| || | || || || ||
Sbjct 496764 GTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 496705
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| || || || |||| || ||| ||||| || || | ||| |||||||| ||||||
Sbjct 496704 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT 496645
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|| || | | | |||| | ||| ||||| | || || ||||| || ||
Sbjct 496644 AGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGT 496585
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|||||| || ||||||||||||||
Sbjct 496584 CAGAGTTTTAACAAAGATTTGCAT 496561
>seq7
Length=68045021
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| ||||||||| || |||||||| || ||| | || || || ||
Sbjct 66407460 GTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG 66407401
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| ||||||| ||| ||||| || || | |||||||||||| ||| ||
Sbjct 66407400 CTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 66407341
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|| || | | | |||| || ||||||||||| || || ||||| || ||
Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 66407281
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| |||||
Sbjct 66407280 CAAGGTCTTCACAAAGATCTGCAT 66407257
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || ||| | || |||
Sbjct 66406553 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 66406494
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||| || || ||||||| ||| ||||| || || | || ||||| |||
Sbjct 66406493 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 66406434
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | || ||||| | ||||||||||||
Sbjct 66406433 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 66406374
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| ||||||||||| ||||| |||||
Sbjct 66406373 CCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| || ||| |||| || || || || || |||||
Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| | ||| | |||||||||||| || || ||||||
Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| | |||||||||| || || ||||| || || || ||||| ||
Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813
Query 45325 AAAGATTTGCAT 45336
||| || |||||
Sbjct 66406812 AAAAATCTGCAT 66406801
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || |||| || | ||||||||||| || |||||| || ||||| ||||| |
Sbjct 66407255 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCC 66407196
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| ||| | || || || || || || || || ||||||| ||| ||||| || ||
Sbjct 66407195 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 66407136
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| || || ||| || | | | |||| | ||| |||
Sbjct 66407135 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 66407076
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || || || || || || ||||||||||||||||||||
Sbjct 66407075 TCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| ||| |||| | || || || || ||||| |||||
Sbjct 66406764 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 66406705
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| || || | || ||||| ||| || || ||| ||
Sbjct 66406704 GATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTT 66406645
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| | |||||||||| || || ||||| || || |||||||| ||
Sbjct 66406644 GTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAAC 66406585
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 66406584 GAAGATCTGCAT 66406573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395060056891045
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