Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 seq1 95.1 1e-14 seq11 84.2 2e-11 >seq10 Length=65527505 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| ||| Sbjct 1071807 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 1071748 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||| || || | || || |||||| Sbjct 1071747 GACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAG 1071688 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371 || | | || || |||||||| ||||||||||| | ||| || || |||||| || Sbjct 1071687 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 1071629 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || |||||||| || | || || ||||| |||| Sbjct 1071628 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 1071579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| ||||||| || || |||||| | || |||||| || Sbjct 1072492 CATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 1072433 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||||||||| | || || ||||| Sbjct 1072432 TGACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 1072373 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || || ||||| ||| | || ||| | ||| | ||||| || Sbjct 1072372 GCAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAA 1072313 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || ||||| |||| || Sbjct 1072312 CATCCAGAAGGAATCAACCCTTCACTTGGTGCT 1072280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || || || |||||| | || || ||| || Sbjct 1072719 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 1072660 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||||| | || || |||||| Sbjct 1072659 GACACCATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 1072600 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || || || || ||| | |||||| | ||| | ||| ||||| || Sbjct 1072599 CAGAGGCTGATCTTTGCAGGAAAGCAGCTTGAAGACGGTCGTACTCT-AGCTGATTACAA 1072541 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || ||||| || |||| || Sbjct 1072540 CATTCAGAAAGAGTCAACTCTCCACTTGGTGCT 1072508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || || || |||||| | || |||||| ||| Sbjct 1072263 ATGCAAATTTTTGTGAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 1072204 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||||||| | || || |||||| Sbjct 1072203 GACACCATTGACAATGTTAAGGCTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1072144 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || ||||| ||| | || ||| | ||| | ||||| ||| Sbjct 1072143 CAAAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 1072084 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || ||||| |||| ||| Sbjct 1072083 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 1072051 >seq1 Length=98543444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||||||| | || ||||| | Sbjct 57604105 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 57604164 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | || |||||||||||| | || || ||| Sbjct 57604165 TCCGACACCATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 57604224 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || || ||| | || || | ||| | ||| || Sbjct 57604225 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 57604284 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 57604285 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 57604319 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || |||||||| | || |||||| || Sbjct 87380198 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCG 87380257 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | |||||| | || ||||||||||| | || || ||| Sbjct 87380258 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 87380317 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367 |||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| |||| Sbjct 87380318 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 87380375 Query 31368 ATAACATTCAAAAAG 31382 | |||||||| |||| Sbjct 87380376 ACAACATTCAGAAAG 87380390 >seq11 Length=56302525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| || || || || || | || || || || Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || |||||| Sbjct 496621 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 496680 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || ||||| |||||| | ||||| | || | || ||||| || Sbjct 496681 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 496739 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || || ||||| || || ||| | || | || |||| Sbjct 496740 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTA 496789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748875808400