Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1141 356 5e-94 >seq1141 Length=3271 Score = 356 bits (394), Expect = 5e-94 Identities = 611/874 (70%), Gaps = 41/874 (5%) Strand=Plus/Minus Query 2946 CGCCACCACCACCAGACCCGCGGTGTCGCCCGTCTCGGCG---GGGTCATAGCCCAGCCA 3002 |||||| |||||||| | || ||||||| || || ||||| ||||||| ||| Sbjct 3271 CGCCACGACCACCAGCGCGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCA 3212 Query 3003 CACCTGGCGATCACCGAACGGCCGCAGCG-CGAACGGCTTGTAGTCCTCCGACCACAGGT 3061 |||| |||| |||||| || || ||| | || ||| | |||||||| |||| | Sbjct 3211 TACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCG-GAAGTCCTCC---CACACCT 3156 Query 3062 CCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTCGT 3121 ||||||| |||||||||| || ||||| | || |||||| | || ||| | Sbjct 3155 CCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCAT 3096 Query 3122 CGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGCT 3181 ||| ||| ||||||||||||||||| ||| || | || |||||| || |||| || Sbjct 3095 CGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACT 3036 Query 3182 CGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGC 3241 ||||| ||||||||| | |||||||| ||| ||| || | ||||| ||||| Sbjct 3035 GGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTT 2976 Query 3242 GCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGACTTACGTCGATCT 3301 ||| | |||| ||||| | || || | ||||| | | || || ||||| | Sbjct 2975 TCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCGTGGCTGACGTCAACGC 2916 Query 3302 TGATGCGATCGGCGGCCGGCTT--GCCCTTG-TTGAAGCGCTCGCCAGTCCAGAATGTGT 3358 |||| | || | | ||| |||| | ||||| || |||||| |||||| | || Sbjct 2915 GGATGTGGTCTTC---CTTCTTCCGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859 Query 3359 AGGCCTCATGCGCCA---TCGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTC- 3414 | || || || || | ||||| ||||||||||| || ||| | || | |||| Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAA---GGCGTCGAGAAATAAGTCTGCCGCCA---CTTCG 2805 Query 3415 --TGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAA---CTTGAACGTCCAGA 3469 || || ||||| ||| ||| |||||| |||||| | ||| || || |||||| Sbjct 2804 AGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGA---TCCAGA 2748 Query 3470 AGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGA 3529 || ||||||| | |||| ||||||||| |||| ||| || || || ||||| ||||||| Sbjct 2747 AGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGA 2688 Query 3530 GGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCTA 3589 |||| | || |||||||||||||| | ||||| ||||||||||| || || || Sbjct 2687 GGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGG 2628 Query 3590 CCGCATCGCGCGCGAAGGCCTGGATA---TACGCCTTGAAGATGTGCGCTTGGGCCTTGC 3646 | ||||| |||||| |||||| || |||||| | ||| || || ||||||| Sbjct 2627 CAGCATCCTTCGCGAA---CTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGC 2571 Query 3647 TGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGGG 3706 ||||||||| ||| ||||| ||||||||||| || ||| || || | ||||| || | Sbjct 2570 TGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTG 2511 Query 3707 CGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGCTGATT-- 3764 |||| || ||||||| |||||||| || ||| |||| |||| | |||| | Sbjct 2510 CGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTCTCTGA 2451 Query 3765 -ACCCGCGCGGTACCAGTCTTTCTGGTAGTCGAA 3797 |||||| ||||||| | |||||||||||| Sbjct 2450 GACCCGCTTCGTACCAGGCACGCTGGTAGTCGAA 2417 Score = 113 bits (124), Expect = 1e-20 Identities = 253/377 (67%), Gaps = 9/377 (2%) Strand=Plus/Minus Query 5288 TCGCCAAGCTCAACGGCGT-GAACTCCGCCGTCCAGACCTTCGCCGTCGAGCCGAGTGTC 5346 ||||||| || |||||||| |||| | | | || | ||| ||| | ||||| ||| Sbjct 376 TCGCCAAACTGAACGGCGTTGAACGC-GTTGACCGCAAATTCAGCGTGCAACCGAGCGTC 318 Query 5347 CAGCAGAAGCTGGAGCAACGTA--TTCAGGAGTCCAGCGAGTTCCTGAAGCAGATCAACG 5404 |||||| |||||| |||| | | ||||| || || || || || |||||||||||| Sbjct 317 CAGCAGCGGCTGGA--AACGAAGGTGCAGGAATCGAGTGAATTTCTCCAGCAGATCAACG 260 Query 5405 TCTACGGCGTCGACGAGCTGCAGGGCGAGAAGATCGGCATCGGCGTCNNNNNNACCATCG 5464 | | ||||| |||| | | ||||||||||||||| ||||||| | | | Sbjct 259 TTCATGGCGTGCTGGAGCAGGAAGGCGAGAAGATCGGCCTCGGCGTGTCCGGCCCGGTGG 200 Query 5465 CCAGCCGTACCGATACCACTGGCGACGGTGTACGCAAGCCGCGCGACGTGTCCGCGCTCG 5524 || || ||||| || || | | | | || || | ||||| | | |||| | Sbjct 199 CCGGCACCACCGACACGACGGTCAA---GGACCGGCAGACCAGCGACATTGCGACGCTGG 143 Query 5525 ACAACCAGCGTTACGAGTGCAAGCACACCGACTTCGACACCGCAATCACCTACGCCATGC 5584 | | ||| ||| |||| ||| ||| |||||| ||||||||| | Sbjct 142 ATGGTCGCAAGTACCGCTGCGAGCAGACCAACTCGGACACCCACATCACCTACCAGCGCC 83 Query 5585 TCGACGCCTGGGCCAAGTTCCCCGAGTTCCAGGCCCTGCTGCGCGACGCGATCCTCAAGC 5644 | ||||| ||||| ||||||||||| |||||| | | | |||||||| ||||| | Sbjct 82 TTGACGCGTGGGCGAAGTTCCCCGACTTCCAGACGCGCATTCGCGACGCCATCCTGCGCC 23 Query 5645 GCCAGGCCCTCGACCGC 5661 ||||||| ||||| ||| Sbjct 22 GCCAGGCGCTCGATCGC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113730152375580