Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq4 102 8e-17 >seq2 Length=55340444 Score = 111 bits (122), Expect = 1e-19 Identities = 374/580 (64%), Gaps = 2/580 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| || |||||||||||||| |||| ||||| || || ||| Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || |||||||| | ||||||||| | | || || ||| Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 54781671 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || ||| ||||| || || | | || | | | | | | Sbjct 54781670 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCATCG 54781611 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||||| |||||| | || ||||||| || || ||||| || || || Sbjct 54781610 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGG 54781551 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 || || | | ||||| | ||| | | || | || | | ||||| ||||| Sbjct 54781550 AACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATC 54781491 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || ||||| ||||| || || || ||||| || ||||||||| || ||||| | | | Sbjct 54781490 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACC 54781431 Query 11987 TGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGC 12045 || ||||| ||| || ||| | || | ||||| || || || || | || Sbjct 54781430 TGGACATCTTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGC 54781372 Query 12046 AAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 |||||| || || | ||| | || || | |||| | |||| || ||||| | Sbjct 54781371 AAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTG 54781312 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | ||| | || | ||| |||||||| | ||||| ||| ||||| | || || Sbjct 54781311 ACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTT 54781252 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||||||| ||| || | |||||| ||| ||||| ||| Sbjct 54781251 GTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 54781212 >seq4 Length=66470942 Score = 102 bits (112), Expect = 8e-17 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 50409330 TTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 50409271 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 50409270 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGA 50409211 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAG 38576 ||| ||||| |||||||||||||| ||||| | || || | | || ||||| || Sbjct 50409210 TACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATC--TTTAA-AAG 50409154 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 50409153 GTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 50409096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506381118800