Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11 107 2e-18 seq10 93.3 4e-14 >seq11 Length=56302525 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || | |||| |||||||||||||| ||||| ||||| Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| |||||||| |||||| ||||||| | |||||||| ||||| Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | ||| | | || | ||||| | ||| || Sbjct 496439 ATGCCTTCCTTGTC-TTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAAC 496381 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| ||||| | || || || ||||| ||||| Sbjct 496380 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 >seq10 Length=65527505 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || ||||||| || ||||| || || ||||| ||||| Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || || || || ||| |||||| | ||||| || || || Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | ||||| | ||||| Sbjct 1071929 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 1071987 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || |||||||| Sbjct 1071988 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 || ||| | ||||| || || ||||| |||||||| ||||| || || || || Sbjct 463815 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATC 463874 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 463875 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 463934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496044498484000