Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq11 107 2e-18
seq10 93.3 4e-14
>seq11
Length=56302525
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| ||| | || | |||| |||||||||||||| ||||| |||||
Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| | ||||| |||||||| |||||| ||||||| | |||||||| |||||
Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| ||||| ||| | || | ||| | | || | ||||| | ||| ||
Sbjct 496439 ATGCCTTCCTTGTC-TTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAAC 496381
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || | ||||| ||||| | || || || ||||| |||||
Sbjct 496380 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333
>seq10
Length=65527505
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||||| || ||||||| || ||||| || || ||||| |||||
Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | ||| || || || || || ||| |||||| | ||||| || || ||
Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| |||| | ||| | | || | ||||| | |||||
Sbjct 1071929 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 1071987
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||||| ||||| || || || || ||||||||
Sbjct 1071988 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611
|| ||| | ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct 463815 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATC 463874
Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| ||
Sbjct 463875 TTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 463934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496044498484000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |