Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=55340444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||||||||||||||| || | || || ||||| ||| | || ||||| || ||| Sbjct 54781790 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 54781731 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 ||||| ||||| || || |||||||| ||||||||||| | | || ||| ||| Sbjct 54781730 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 54781671 Query 13989 AATATTCCCTCAACTGCAGCAAACGC 14014 || || || ||||| |||||| || Sbjct 54781670 AAAATCCCTTCAACACAAGCAAAAGC 54781645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709140693000