Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq7 89.7 4e-13
seq1 86.0 5e-12
>seq7
Length=68045021
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||||||||||| ||| |||||| || | |||||||| |
Sbjct 66406343 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 66406284
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| |||| ||||| || || || || || || | | || ||||| | ||
Sbjct 66406283 AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGA 66406224
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || |||| | || || || | | ||| || | || ||
Sbjct 66406223 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 66406164
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || ||||| |||||||| |||||||||||||| || |||||
Sbjct 66406163 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | ||| || | |||||| || | || ||||||||| | || || || | |
Sbjct 66407255 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCC 66407196
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| || || | || || | || ||||| ||||||||||| | ||| || || | ||
Sbjct 66407195 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 66407136
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| ||| || || || |||| | ||||| || ||| |||||| ||| ||| ||
Sbjct 66407135 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCG-GAGCTCTCAAC 66407077
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || ||||| ||||| || || |||||||| ||||||||
Sbjct 66407076 CTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
>seq1
Length=98543444
Score = 86.0 bits (94), Expect = 5e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990
|||||||| | | |||||| | || || | || || ||||| || |||||||||||
Sbjct 87380379 TTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGC 87380320
Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050
|| || | || | |||||| || || ||| ||||||| || ||| ||||||
Sbjct 87380319 TGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCG 87380260
Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
| | || || || | ||| || || || || || ||||||||||| || || ||||||
Sbjct 87380259 CTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGCATT 87380200
Query 43111 TT 43112
||
Sbjct 87380199 TT 87380198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381354982222410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |