Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 seq4 100 4e-16 >seq2 Length=55340444 Score = 174 bits (192), Expect = 2e-38 Identities = 588/909 (65%), Gaps = 20/909 (2%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||| ||| || || || || || | || || || ||||||||||| ||| Sbjct 54782093 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 54782034 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 | || || ||||| |||| || ||||| | |||| || || || | | | Sbjct 54782033 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAA 54781974 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||| || | |||||| || || | || ||||| ||| | |||||| || | | Sbjct 54781973 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 54781914 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996 |||||||| | || | |||||||| |||| | ||| | | | ||| || | Sbjct 54781913 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 54781856 Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATG 42051 | || |||| | ||| || ||| || ||| || || || | || || Sbjct 54781855 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTG 54781797 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 | | | |||||| || ||||| ||||||| ||| || ||||| |||||| || || Sbjct 54781796 T----AAAGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 54781741 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 || || || | ||| ||||||| || || ||||| | ||||||||| || || Sbjct 54781740 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCT 54781681 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---C 42228 ||| ||||| || ||||| || ||||| || | | | ||| | || | Sbjct 54781680 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTC 54781621 Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 || | ||| ||||| | ||||| | |||||||||| |||||||| || || Sbjct 54781620 GGACC---CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGT 54781564 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || || ||| || | | | | ||||| | | ||| || | || | || | || Sbjct 54781563 CTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG 54781504 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 | ||| ||||| || ||||| || || |||||||| || || || || |||||| | Sbjct 54781503 CAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACG 54781444 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||||||| |||||| || ||| | || | | |||| | || || || || || Sbjct 54781443 AGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCC 54781384 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 ||| ||| |||||||| || | ||||| | || |||| |||| | | ||||| Sbjct 54781383 GTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAG 54781324 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 || | ||| | | |||| | || | ||| ||||||||| ||||||| || ||||| Sbjct 54781323 GTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGC 54781264 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 || || || ||||| | ||| || | |||| ||||||||||| ||| |||| Sbjct 54781263 CATGGCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCG 54781204 Query 42649 ATTTGGATT 42657 || ||| || Sbjct 54781203 ATCTGGGTT 54781195 >seq4 Length=66470942 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | || |||||||| || || |||||| | | ||||| | || Sbjct 4388111 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4388170 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| || || ||||| ||||| | |||||||||||| | ||| | ||| | Sbjct 4388171 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATTCCTACAGAGACTCTCATCAG 4388230 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || || || ||||| || | || || || || || | ||| ||| |||| Sbjct 4388231 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4388290 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| |||||||| || | || |||||||| || || || || Sbjct 4388291 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 4388338 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| ||| Sbjct 4387791 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 4387850 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || ||| || ||||||||||| | ||| Sbjct 4387851 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 4387910 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| || | || || || | || ||||| ||| Sbjct 4387911 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 4387970 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| ||||||||||| ||||| | || || |||||| Sbjct 4387971 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 4388012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112815840200