Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 174 2e-38
seq4 100 4e-16
>seq2
Length=55340444
Score = 174 bits (192), Expect = 2e-38
Identities = 588/909 (65%), Gaps = 20/909 (2%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||||||| ||| || || || || || | || || || ||||||||||| |||
Sbjct 54782093 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 54782034
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
| || || ||||| |||| || ||||| | |||| || || || | | |
Sbjct 54782033 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAA 54781974
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938
||||| || | |||||| || || | || ||||| ||| | |||||| || | |
Sbjct 54781973 CCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCA 54781914
Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGA 41996
|||||||| | || | |||||||| |||| | ||| | | | ||| || |
Sbjct 54781913 TTCATTCCCACCAGAGCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCA 54781856
Query 41997 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATG 42051
| || |||| | ||| || ||| || ||| || || || | || ||
Sbjct 54781855 CAGCATCTGCAACAATTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTG 54781797
Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111
| | | |||||| || ||||| ||||||| ||| || ||||| |||||| || ||
Sbjct 54781796 T----AAAGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 54781741
Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171
|| || || | ||| ||||||| || || ||||| | ||||||||| || ||
Sbjct 54781740 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCT 54781681
Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---C 42228
||| ||||| || ||||| || ||||| || | | | ||| | || |
Sbjct 54781680 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTC 54781621
Query 42229 GGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288
|| | ||| ||||| | ||||| | |||||||||| |||||||| || ||
Sbjct 54781620 GGACC---CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGT 54781564
Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348
|| || ||| || | | | | ||||| | | ||| || | || | || | ||
Sbjct 54781563 CTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAG 54781504
Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408
| ||| ||||| || ||||| || || |||||||| || || || || |||||| |
Sbjct 54781503 CAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACG 54781444
Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468
||||||| |||||| || ||| | || | | |||| | || || || || ||
Sbjct 54781443 AGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCC 54781384
Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528
||| ||| |||||||| || | ||||| | || |||| |||| | | |||||
Sbjct 54781383 GTCTGAGGCGGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAG 54781324
Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588
|| | ||| | | |||| | || | ||| ||||||||| ||||||| || |||||
Sbjct 54781323 GTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGC 54781264
Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648
|| || || ||||| | ||| || | |||| ||||||||||| ||| ||||
Sbjct 54781263 CATGGCTTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCG 54781204
Query 42649 ATTTGGATT 42657
|| ||| ||
Sbjct 54781203 ATCTGGGTT 54781195
>seq4
Length=66470942
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|||||| |||||||| | || |||||||| || || |||||| | | ||||| | ||
Sbjct 4388111 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 4388170
Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536
|| |||| || || ||||| ||||| | |||||||||||| | ||| | ||| |
Sbjct 4388171 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATTCCTACAGAGACTCTCATCAG 4388230
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596
||| || || || ||||| || | || || || || || | ||| ||| ||||
Sbjct 4388231 CATGTGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGATCGCTCCAG 4388290
Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||||| |||||||| || | || |||||||| || || || ||
Sbjct 4388291 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCATATATGAT 4388338
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| |||
Sbjct 4387791 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCCA 4387850
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297
|| |||| ||||| || || ||||| || ||| || ||||||||||| | |||
Sbjct 4387851 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGAT 4387910
Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357
| || ||||| || || ||| || | || || || | || ||||| |||
Sbjct 4387911 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 4387970
Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
||||| ||||||||||| ||||| | || || ||||||
Sbjct 4387971 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 4388012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671112815840200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |