Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq11 107 2e-18
seq10 87.8 2e-12
seq4 84.2 2e-11
>seq11
Length=56302525
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | || | ||||| ||||| |||||||| |||||||||||
Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | ||||| || ||||| |||||| ||||||| | |||||||| |||||
Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| ||| || ||| | | || | ||||| | || ||
Sbjct 496439 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAACC 496380
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | ||||| ||||| | ||| || || ||||| |||||
Sbjct 496379 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| || || || ||||| ||||||||||| | ||| | ||||| || |||
Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
|| |||||| ||||||| | ||||| || || || || ||||| ||||| ||||||
Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
||| | | || | ||||| | | || || |||| ||| | ||||| ||||||
Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 496584
Query 143162 AATGTTTTTACGAATATTTGCAT 143184
| ||||| || || ||||||||
Sbjct 496583 AGAGTTTTAACAAAGATTTGCAT 496561
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| |||||||| || | ||| | || || || || || |||||||| ||
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || ||| ||| || ||||||||||||||| |||||| ||| || || || || ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || || ||||| ||| ||| ||| | | || | || || | || ||
Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 497292
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||| || ||||| || || || || ||||||||
Sbjct 497291 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 497245
>seq10
Length=65527505
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/117 (77%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| || |||||||| || ||||||||||| || || || ||||| | ||||
Sbjct 463825 TGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTTCTACCATCTTCCAATTGT 463884
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC--GGTAA 143096
|| |||||| | ||||| | |||||||| ||||||||||||||||| || |||||
Sbjct 463885 TTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATCCTGGTAA 463941
>seq4
Length=66470942
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931
|||| ||| || | |||||| | |||| || || || | ||| || | |||||| ||
Sbjct 4386431 AATGTATCTGCAAGACCTTGGACCCCAAGTCCAATAGGTCTATGTCGTAAATTAGACCTT 4386490
Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977
||||||||||||| ||||||| | ||| |||||||||||| ||||
Sbjct 4386491 TTTGCAGTTTCAACAGGGTAGTAGTTGACATCAATAATTTTGTTCA 4386536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506994467996400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |