Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_004745.1
Length=30728
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 206 5e-49
>seq1141
Length=3271
Score = 206 bits (228), Expect = 5e-49
Identities = 550/823 (67%), Gaps = 22/823 (3%)
Strand=Plus/Minus
Query 1707 GCCAGTACCACGCATC-CGGCACTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1761
|||| ||||| || | ||||||||||||||| | || ||||||||| || | ||
Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213
Query 1762 ATACCGGGCGGGAGCCGAACGGATTGG-CGGCAAAGGGTGCATAGTCTTCCCATTCTTCC 1820
||||| || ||||| || || || | || || | | |||| ||||| | |||
Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154
Query 1821 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTC 1879
||| |||||||||||| ||| ||| | | |||||| || || ||| |||| ||
Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095
Query 1880 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTG 1939
| || | ||||| | |||||| | || || | |||||| || | | |||
Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035
Query 1940 CTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 1999
|| | ||||||||| ||||||| || | |||||| || | |||||||||||
Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975
Query 2000 CCACTGGCCGTCCGCACAGAGAAGACC-TCCGGCAAGGGCGTTATGACTGACGTCGATTT 2058
|||||| |||||||| || | | || ||| ||||| || || |||||||| |
Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916
Query 2059 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGT 2118
| | | || | || ||| || || |||||||| | || |||||||||||||
Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859
Query 2119 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGGCTCTGTG 2178
| || ||||| || || | || || || |||||||| ||| ||| | ||
Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799
Query 2179 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGT 2238
|||||| || || |||||||| ||||| | || || | |||||||||| |||||
Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739
Query 2239 CGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2298
| | || |||| ||||| || |||||| |||||| | ||| |||||||| ||| ||
Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679
Query 2299 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAAC--CAG 2356
| | |||||||| || || ||||| || || |||| || ||| | | ||
Sbjct 2678 GCGTCGCGCCGTTCGG---CAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622
Query 2357 ACGG-GCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACA 2415
| || || ||||||||||| ||| || | ||||||| || ||||||||||
Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562
Query 2416 GAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAA 2475
|||||||| || | || || ||| ||| | | ||||| || | |||||
Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502
Query 2476 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCTCGGATGCG 2518
|||| || || ||||||||| ||||| | || ||||| ||
Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 98204332238100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |