Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq1141 206 5e-49 >seq1141 Length=3271 Score = 206 bits (228), Expect = 5e-49 Identities = 550/823 (67%), Gaps = 22/823 (3%) Strand=Plus/Minus Query 1707 GCCAGTACCACGCATC-CGGCACTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1761 |||| ||||| || | ||||||||||||||| | || ||||||||| || | || Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213 Query 1762 ATACCGGGCGGGAGCCGAACGGATTGG-CGGCAAAGGGTGCATAGTCTTCCCATTCTTCC 1820 ||||| || ||||| || || || | || || | | |||| ||||| | ||| Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154 Query 1821 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTC 1879 ||| |||||||||||| ||| ||| | | |||||| || || ||| |||| || Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095 Query 1880 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTG 1939 | || | ||||| | |||||| | || || | |||||| || | | ||| Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035 Query 1940 CTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 1999 || | ||||||||| ||||||| || | |||||| || | ||||||||||| Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975 Query 2000 CCACTGGCCGTCCGCACAGAGAAGACC-TCCGGCAAGGGCGTTATGACTGACGTCGATTT 2058 |||||| |||||||| || | | || ||| ||||| || || |||||||| | Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916 Query 2059 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGT 2118 | | | || | || ||| || || |||||||| | || ||||||||||||| Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859 Query 2119 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGGCTCTGTG 2178 | || ||||| || || | || || || |||||||| ||| ||| | || Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799 Query 2179 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGT 2238 |||||| || || |||||||| ||||| | || || | |||||||||| ||||| Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739 Query 2239 CGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2298 | | || |||| ||||| || |||||| |||||| | ||| |||||||| ||| || Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679 Query 2299 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAAC--CAG 2356 | | |||||||| || || ||||| || || |||| || ||| | | || Sbjct 2678 GCGTCGCGCCGTTCGG---CAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622 Query 2357 ACGG-GCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACA 2415 | || || ||||||||||| ||| || | ||||||| || |||||||||| Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562 Query 2416 GAAAAATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAA 2475 |||||||| || | || || ||| ||| | | ||||| || | ||||| Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502 Query 2476 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCTCGGATGCG 2518 |||| || || ||||||||| ||||| | || ||||| || Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98204332238100