Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq10 98.7 6e-16
seq1 87.8 1e-12
>seq10
Length=65527505
Score = 98.7 bits (108), Expect = 6e-16
Identities = 153/216 (71%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
||| || | ||| | ||| ||||| ||||| ||||||||||||| ||| | | || ||
Sbjct 65066518 CAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAG-CAAGTGTA--TGATC 65066574
Query 33217 ATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273
|||| ||||| ||||||| ||||| ||| | ||| || || | ||| || ||||||||
Sbjct 65066575 ATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGAATTCCTTCTTT 65066634
Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| |||| ||| || | | ||| |||| | | || |||||||| ||
Sbjct 65066635 GTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACATCCAGAGTAAT 65066694
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| | |||||||| || || ||||||||
Sbjct 65066695 GGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730
>seq1
Length=98543444
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239
|||| || || |||||||||| | | | || || || | |||||||| || |
Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 87380331
Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299
| || || |||||||||| || || ||||| || || |||| ||| || | |
Sbjct 87380330 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 87380271
Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359
||| |||||| | | || ||| || || || ||||| || |||||||||||||| ||||
Sbjct 87380270 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 87380211
Query 33360 AAATTTGCATGTT 33372
| || ||||| ||
Sbjct 87380210 AGATCTGCATTTT 87380198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318765381354210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |