Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_005056.1
Length=32684
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 197 3e-46
>seq1141
Length=3271
Score = 197 bits (218), Expect = 3e-46
Identities = 548/823 (67%), Gaps = 22/823 (3%)
Strand=Plus/Minus
Query 1706 GCCAGTACCACGCATC-CGGCGCTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1760
|||| ||||| || | |||| |||||||||| | || ||||||||| || | ||
Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213
Query 1761 AGACCGGGCGGGAGCCGAACGGATTGG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1819
| ||| || ||||| || || || | || |||| | |||| ||||| | |||
Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154
Query 1820 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTC 1878
||| |||||||||||| ||| ||| | | |||||| || || ||| |||| ||
Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095
Query 1879 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTG 1938
| || | ||||| | |||||| | || || | |||||| || | | |||
Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035
Query 1939 CTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 1998
|| | |||||||| |||||||||| | |||||| || | |||||||||||
Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975
Query 1999 CCACTGGCCGTCCGCACAGAGAAGACC-TCCGGCAAGGGCGTTATGACTGACGTCGATTT 2057
|||||| |||||||| || | | || ||| ||||| || || |||||||| |
Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916
Query 2058 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGAT 2117
| | | || | || ||| || || || ||||| | || ||||||||||| |
Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859
Query 2118 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 2177
| || ||||| || || | || || || |||||||| ||| ||| | ||
Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799
Query 2178 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGT 2237
|||||| || || |||||||| ||||| | || || | |||||||||| |||||
Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739
Query 2238 CGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2297
| | || |||| ||||| || |||||| |||||| | ||| |||||||| ||| ||
Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679
Query 2298 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC--AACCAG 2355
| | |||||| || || || ||||| || || |||| || ||| | | ||
Sbjct 2678 GCGTCGCGCCG---TTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622
Query 2356 CC-GGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACA 2414
|| || || ||||||||||| ||| || | ||||||| || ||||||||||
Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562
Query 2415 GAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAA 2474
|||||||| || | || || ||| || | | ||||| || | |||||
Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502
Query 2475 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCG 2517
|||| || || ||||||||| ||||| | || |||||| ||
Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104463298476540
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