Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq1141 197 3e-46 >seq1141 Length=3271 Score = 197 bits (218), Expect = 3e-46 Identities = 548/823 (67%), Gaps = 22/823 (3%) Strand=Plus/Minus Query 1706 GCCAGTACCACGCATC-CGGCGCTGTCGCCACGGT----GTGACGGGTCGTAACCAATCC 1760 |||| ||||| || | |||| |||||||||| | || ||||||||| || | || Sbjct 3270 GCCACGACCAC-CAGCGCGGCACTGTCGCCACCGCCGCCGTT-CGGGTCGTAGCCCACCC 3213 Query 1761 AGACCGGGCGGGAGCCGAACGGATTGG-CGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1819 | ||| || ||||| || || || | || |||| | |||| ||||| | ||| Sbjct 3212 ATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGCGGA-AGTCCTCCCACACCTCC 3154 Query 1820 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTC 1878 ||| |||||||||||| ||| ||| | | |||||| || || ||| |||| || Sbjct 3153 CAGC-TGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATC 3095 Query 1879 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTG 1938 | || | ||||| | |||||| | || || | |||||| || | | ||| Sbjct 3094 GATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTG 3035 Query 1939 CTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCG 1998 || | |||||||| |||||||||| | |||||| || | ||||||||||| Sbjct 3034 GTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTT 2975 Query 1999 CCACTGGCCGTCCGCACAGAGAAGACC-TCCGGCAAGGGCGTTATGACTGACGTCGATTT 2057 |||||| |||||||| || | | || ||| ||||| || || |||||||| | Sbjct 2974 CCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCGCG-TGGCTGACGTCAACGC 2916 Query 2058 CCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGAT 2117 | | | || | || ||| || || || ||||| | || ||||||||||| | Sbjct 2915 GGATGTGGTCTTCCTT-CTTCCGC--CCGCGATTGAACAGCGCGCCAGACCAGAACGGGT 2859 Query 2118 AGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTG 2177 | || ||||| || || | || || || |||||||| ||| ||| | || Sbjct 2858 ACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGA 2799 Query 2178 AGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCGT 2237 |||||| || || |||||||| ||||| | || || | |||||||||| ||||| Sbjct 2798 TGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGT 2739 Query 2238 CGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCA 2297 | | || |||| ||||| || |||||| |||||| | ||| |||||||| ||| || Sbjct 2738 CCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACA 2679 Query 2298 GTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTC--AACCAG 2355 | | |||||| || || || ||||| || || |||| || ||| | | || Sbjct 2678 GCGTCGCGCCG---TTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCAT 2622 Query 2356 CC-GGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACA 2414 || || || ||||||||||| ||| || | ||||||| || |||||||||| Sbjct 2621 CCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACA 2562 Query 2415 GAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAA 2474 |||||||| || | || || ||| || | | ||||| || | ||||| Sbjct 2561 AGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACC 2502 Query 2475 ACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCG 2517 |||| || || ||||||||| ||||| | || |||||| || Sbjct 2501 ACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104463298476540