Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 >seq2 Length=55340444 Score = 116 bits (128), Expect = 3e-21 Identities = 481/745 (65%), Gaps = 19/745 (3%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 54782093 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 54782034 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT---A 12961 | ||| ||| ||||| ||||||| ||||| | || || | ||| | || | Sbjct 54782033 TGTAAACTAATCAGCTCCATCCAATCGAATGGATTCT--GAGCATT-GTACATCTTGTCA 54781977 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||||||||| |||||||||||||| | |||| ||||| Sbjct 54781976 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 54781917 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||| | ||| || | || | ||||||| || Sbjct 54781916 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 54781857 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT--TTGATAG-ATGC 13138 || || || ||| || | || | | || || || | || | | ||| | | Sbjct 54781856 ACAGCATCTGCAACAATTCCCCTGACT-CGCTC-CTCAGTTAGCTTCGTCCTTAGCAAAC 54781799 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | || | || ||| ||||||||||||||||| ||||| ||||| |||| ||| ||| Sbjct 54781798 TGTAA-AGCAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTT 54781740 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| || ||||| | ||| |||||||| | ||||||||| | | || | | Sbjct 54781739 GAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCT 54781681 Query 13259 CCCG-aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| || || || |||||||| ||||| || | ||| | || | | || Sbjct 54781680 TCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGT--- 54781624 Query 13318 ATTTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 || || | || ||||| |||||| || || || | || ||| || || Sbjct 54781623 -TTCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTG 54781565 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || ||||| || || | | ||||| | | || || || | || | || Sbjct 54781564 TCTCAATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACA 54781505 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 || || ||||| || ||||| ||||| || || || |||||||| ||||| ||| | Sbjct 54781504 GCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCAC 54781445 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 |||||| | ||||| || || || ||| | || | ||| || ||| || | Sbjct 54781444 GAGCCTCGGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGC 54781385 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAG 13581 |||| || |||||||| ||||| Sbjct 54781384 CGTCTGAGGCGGCAAAAAAGGCAAG 54781360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965880579290