Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1141 302 9e-78 >seq1141 Length=3271 Score = 302 bits (334), Expect = 9e-78 Identities = 556/804 (69%), Gaps = 16/804 (2%) Strand=Plus/Minus Query 2460 CGGCACTGTCGCC---GGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGA 2516 ||||||||||||| | | | |||||||||||| | ||| ||| || |||| Sbjct 3254 CGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCATACCTCACGATTACCGA 3195 Query 2517 ATGGATGGT-CGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAG 2575 | || || || | || || | |||||||||||| ||| ||||||||||| | Sbjct 3194 AAGGGCGGGGCGACCAATGGCG-GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCG 3136 Query 2576 CGCTGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGTCGACAAACTCGCACATAAAC 2635 ||| ||| | | |||||| ||||| ||| | || |||| || ||||||| | | Sbjct 3135 CGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGC 3076 Query 2636 AGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTG 2695 ||||| | |||||| |||| |||| || | | | ||||||||||||||||||| || Sbjct 3075 AGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTG 3016 Query 2696 CAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAA 2755 ||||||||||| | |||||| || | ||||||||||| |||||| ||||| ||||| Sbjct 3015 CAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCAC 2956 Query 2756 AGAAGCCCA-CCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2814 | | || || || || ||| ||| |||| ||| | |||| |||| | | Sbjct 2955 CGCCGGCCGTCCTGCAAGTTCGC-GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTT 2897 Query 2815 GGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGT 2874 ||||| ||||||||| ||||||||||||| || || || |||| || || | Sbjct 2896 C---CGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCT 2840 Query 2875 GGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGAC 2934 ||||| ||||| || ||||| ||| | | || |||||| || ||||| || Sbjct 2839 CGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCAC 2780 Query 2935 TTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTT 2994 |||||||||| || || | |||||||||| || || | ||| |||| ||||| Sbjct 2779 CTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTG 2720 Query 2995 ATGGCTCTGCGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCC 3054 || ||||||||||||| | || |||||||| ||| |||| | |||||||| || Sbjct 2719 ATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTT-CGGC- 2662 Query 3055 GATGACAATCGGGTCGCCAGTCAGGTCGACGTC--AACCAGTC-GCGCAAACTGGATGAT 3111 | || ||||| ||||| |||| || ||| | | || | ||| ||||||||||| Sbjct 2661 -AACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGAT 2603 Query 3112 GTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCC 3171 ||||| | ||| |||| ||||||| || |||||||||| |||||||| || | || Sbjct 2602 GTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCC 2543 Query 3172 GGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCG 3231 || | | ||| | | ||||| || | || || |||| || || |||||||| Sbjct 2542 CGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCG 2483 Query 3232 GGATTTGAGAATATCGCGAATACG 3255 | || |||| || ||| ||||| Sbjct 2482 GCTCTTCAGAACATTGCGGATACG 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97909943233020