Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_005340.1
Length=30636
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 302 9e-78
>seq1141
Length=3271
Score = 302 bits (334), Expect = 9e-78
Identities = 556/804 (69%), Gaps = 16/804 (2%)
Strand=Plus/Minus
Query 2460 CGGCACTGTCGCC---GGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGCGTGAGCCGA 2516
||||||||||||| | | | |||||||||||| | ||| ||| || ||||
Sbjct 3254 CGGCACTGTCGCCACCGCCGCCGTTCGGGTCGTAGCCCACCCATACCTCACGATTACCGA 3195
Query 2517 ATGGATGGT-CGGCGAACGGGGCGAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAG 2575
| || || || | || || | |||||||||||| ||| ||||||||||| |
Sbjct 3194 AAGGGCGGGGCGACCAATGGCG-GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCG 3136
Query 2576 CGCTGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGTCGACAAACTCGCACATAAAC 2635
||| ||| | | |||||| ||||| ||| | || |||| || ||||||| | |
Sbjct 3135 CGCATGAGCATCGACAGCGGGAAGACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGC 3076
Query 2636 AGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTG 2695
||||| | |||||| |||| |||| || | | | ||||||||||||||||||| ||
Sbjct 3075 AGGTTCTCGAAGTCCGCATCGCTGTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTG 3016
Query 2696 CAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAA 2755
||||||||||| | |||||| || | ||||||||||| |||||| ||||| |||||
Sbjct 3015 CAGCCACCGGCGATGGCGTCTTCCACCGTGACAATCTGTTTCCACTGACCGTCCGCGCAC 2956
Query 2756 AGAAGCCCA-CCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACT 2814
| | || || || || ||| ||| |||| ||| | |||| |||| | |
Sbjct 2955 CGCCGGCCGTCCTGCAAGTTCGC-GTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTT 2897
Query 2815 GGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGT 2874
||||| ||||||||| ||||||||||||| || || || |||| || || |
Sbjct 2896 C---CGCCCGCGATTGAACAGCGCGCCAGACCAGAACGGGTACGCTTCGTGGGCAAGGCT 2840
Query 2875 GGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGAC 2934
||||| ||||| || ||||| ||| | | || |||||| || ||||| ||
Sbjct 2839 CGAAGGCGTCGAGAAATAAGTCTGCCGCCACTTCGAGTGGATGGCCATCCCGGAGGCCAC 2780
Query 2935 TTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTT 2994
|||||||||| || || | |||||||||| || || | ||| |||| |||||
Sbjct 2779 CTTGCGCAGCTCTTGGAAGCGCTGGATCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTG 2720
Query 2995 ATGGCTCTGCGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCC 3054
|| ||||||||||||| | || |||||||| ||| |||| | |||||||| ||
Sbjct 2719 ATAGCTCTGCGCGGTGCGTGCGTTTGTGCCGAGGAAATACAGCGTCGCGCCGTT-CGGC- 2662
Query 3055 GATGACAATCGGGTCGCCAGTCAGGTCGACGTC--AACCAGTC-GCGCAAACTGGATGAT 3111
| || ||||| ||||| |||| || ||| | | || | ||| |||||||||||
Sbjct 2661 -AACACCATCGGCTCGCCCTTCAGCTCCACGCCGGCAGCATCCTTCGCGAACTGGATGAT 2603
Query 3112 GTATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCC 3171
||||| | ||| |||| ||||||| || |||||||||| |||||||| || | ||
Sbjct 2602 GTATTGCTTGAAAACGTGGGCCTGCGCCTTGCTGGCCGACAAGAAAATCTGATTGCGCCC 2543
Query 3172 GGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCG 3231
|| | | ||| | | ||||| || | || || |||| || || ||||||||
Sbjct 2542 CGTGGTCAACGCATCAATGAAGGCCTCCCGTGCGAAATACCACGTGGCACCGATCTGGCG 2483
Query 3232 GGATTTGAGAATATCGCGAATACG 3255
| || |||| || ||| |||||
Sbjct 2482 GCTCTTCAGAACATTGCGGATACG 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97909943233020
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