Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq12 91.5 1e-13 seq7 91.5 1e-13 >seq1 Length=98543444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| |||||| || |||||||| || || || || || | |||| Sbjct 57604317 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 57604259 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || |||| ||||||||||| || || | | |||||||||| Sbjct 57604258 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 57604199 Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || |||| || | || ||||| |||| |||||| ||| | || || | Sbjct 57604198 GGATCTT-GGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTGATCG 57604142 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT-GTCTTGA 48736 | || || || || |||||||| || ||||||||| | |||| || Sbjct 57604141 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGTCTGGA 57604097 >seq12 Length=67145203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | ||| | ||||| |||||| Sbjct 66287165 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 66287224 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || |||| || |||||||| || || | | ||||||||| ||| || Sbjct 66287225 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 66287284 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | || ||||| || || || Sbjct 66287285 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 66287344 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 66287345 AGGGTCTTCACAAAGATCTGCAT 66287367 >seq7 Length=68045021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||||||||| | || ||||||| Sbjct 66406326 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 66406267 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || || | || | | ||||||||| || | | |||||| ||| Sbjct 66406266 CAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 66406207 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || ||||| | | ||| ||| | || || || Sbjct 66406206 GATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 66406149 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||||||||||||||| ||||||||| Sbjct 66406148 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 66406116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || || || ||||||| ||||| Sbjct 66407003 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCGTCCTCGAGCTG 66406945 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || | |||||| || || | | ||||||||| || || Sbjct 66406944 CTTACCAGCGAAAATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTT 66406885 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| |||| ||| ||| | || ||||| || ||||| Sbjct 66406884 AGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGT 66406825 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||||||||| Sbjct 66406824 GAGGGTCTTAACAAAAATCTGCAT 66406801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235053573145