Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
seq12 91.5 1e-13
seq7 91.5 1e-13
>seq1
Length=98543444
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/225 (71%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575
||| | ||| || ||| |||||| || |||||||| || || || || || | ||||
Sbjct 57604317 CACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 57604259
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| |||||||| ||| || |||| ||||||||||| || || | | ||||||||||
Sbjct 57604258 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 57604199
Query 48636 TAATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692
|| || |||| || | || ||||| |||| |||||| ||| | || || |
Sbjct 57604198 GGATCTT-GGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTGATCG 57604142
Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT-GTCTTGA 48736
| || || || || |||||||| || ||||||||| | |||| ||
Sbjct 57604141 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTCGTCTGGA 57604097
>seq12
Length=67145203
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| || |||||||| ||||| | ||| | ||||| ||||||
Sbjct 66287165 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGC 66287224
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|||||| || |||| || |||||||| || || | | ||||||||| ||| ||
Sbjct 66287225 TTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTA 66287284
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | ||||| || | ||||| ||| | || ||||| || || ||
Sbjct 66287285 GCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTC 66287344
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || |||||||| ||||||||
Sbjct 66287345 AGGGTCTTCACAAAGATCTGCAT 66287367
>seq7
Length=68045021
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||| || ||| |||||| || |||||||||||||| | || |||||||
Sbjct 66406326 CACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 66406267
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| || || | || | | ||||||||| || | | |||||| |||
Sbjct 66406266 CAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 66406207
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | || || ||||| | | ||| ||| | || || ||
Sbjct 66406206 GATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTC 66406149
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| |||||||||||||||||||| |||||||||
Sbjct 66406148 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 66406116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| || |||||||| || || || || || ||||||| |||||
Sbjct 66407003 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCGTCCTCGAGCTG 66406945
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || |||| || | |||||| || || | | ||||||||| || ||
Sbjct 66406944 CTTACCAGCGAAAATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTT 66406885
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | ||||| |||| ||| ||| | || ||||| || |||||
Sbjct 66406884 AGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGT 66406825
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
||| || || ||||||||||||||
Sbjct 66406824 GAGGGTCTTAACAAAAATCTGCAT 66406801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421235053573145
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |