Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 129 3e-25 seq4 123 1e-23 seq2 114 7e-21 seq6 113 2e-20 seq10 111 8e-20 seq1 111 8e-20 seq9 109 3e-19 seq5 109 3e-19 >seq3 Length=70787664 Score = 129 bits (142), Expect = 3e-25 Identities = 92/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| ||||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 3175423 TTAA-AAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 3175481 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA-TTGT 11541 |||||||||| |||||||||||||||||||| | || || |||| Sbjct 3175482 ACGACGCTCTAACCAACTGAGCTAATGGGCCATTGATGACTTGT 3175525 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| || | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 57662572 AAAAAAATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 57662631 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 57662632 GACGCTCTAACCAACTGAGCTAATGGGCC 57662660 Score = 116 bits (128), Expect = 2e-21 Identities = 88/105 (84%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| | | ||||||||||||| |||||||| | | |||||||| ||||| Sbjct 4988933 AGGAAAAAAGGGCATTAATAAAAAAT------GGCCCATGCAGGTCTCGAACCTGCGACC 4988880 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4988879 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4988835 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| || | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 56757201 AAAAAAATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 56757260 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||| |||||||||||||||||||| Sbjct 56757261 GATGCTCTAACCAACTGAGCTAATGGGCC 56757289 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10690603 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10690544 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 10690543 CTGAGCTAATGGGCC 10690529 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 6322253 AAAAAATGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 6322310 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 6322311 GCTCTAACCAACTGAGCTAATGGGCC 6322336 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 65467337 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65467396 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 65467397 TGAGCTAATGGGCC 65467410 Score = 82.4 bits (90), Expect = 4e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 6309533 GATCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 6309581 >seq4 Length=66470942 Score = 123 bits (136), Expect = 1e-23 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| | | |||||||| | ||| ||||||||| | | |||||||| |||||||| Sbjct 239701 AAATATAAACGTTATAAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 239642 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 239641 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 239600 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 464058 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 463999 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 463998 AACTGAGCTAATGGGCC 463982 >seq2 Length=55340444 Score = 114 bits (126), Expect = 7e-21 Identities = 86/101 (85%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| | | |||||| |||||| |||||||||| | | |||||||| ||||||||| Sbjct 41298332 AAAAAAAAAATTAAAAAAAAAGT---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 41298388 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 41298389 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 41298429 Score = 113 bits (124), Expect = 2e-20 Identities = 96/114 (84%), Gaps = 5/114 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 33478089 AAAAAATAAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 33478148 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCTAACC 11557 ||||| |||||||||||||||||||| || || || |||||| | | |||||| Sbjct 33478149 GCTCTAACCAACTGAGCTAATGGGCC-TCAAC-AT--TGATTTGT-AGCTAACC 33478197 Score = 113 bits (124), Expect = 2e-20 Identities = 85/99 (86%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 46978029 AAAAAAAGAAATAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 46977970 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||| |||||||||||||||||||| | || |||| Sbjct 46977969 GACGCTCTAACCAACTGAGCTAATGGGCCCT-GATGATT 46977932 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| | | |||||| || ||||||||| | | |||||||| ||||||||||||||| Sbjct 51700314 AGAAATTAGAAAAAAGTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 51700371 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 51700372 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 51700406 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| | ||||||||||||||||||| || Sbjct 33479945 AAAAAATAAAGATGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACAAC 33480004 Query 11504 GCTCTRACCAACTGAGCTAATGGG 11527 ||||| |||||||||||||||||| Sbjct 33480005 GCTCTAACCAACTGAGCTAATGGG 33480028 >seq6 Length=49751636 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 43426661 AATAAAAAAAC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 43426716 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 43426717 GACGCTCTAACCAACTGAGCTAATGGGCC 43426745 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | ||||||| ||||||||||||||||||||||||||||| || Sbjct 31259806 AAATTGGCCCATGCAGGTCCCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31259865 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 31259866 CAACTGAGCTAATGGGCC 31259883 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| || || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 48508067 AAAAACATATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 48508126 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 48508127 CTCTAACCAACTGAGCTAATGGGCC 48508151 >seq10 Length=65527505 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| | | | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 59045167 ATAAAACAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 59045226 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 59045227 ACGCTCTAACCAACTGAGCTAATGGGCC 59045254 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAATTG---GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| ||| || ||||||| | | |||||||| |||||||||||||||||||||| Sbjct 58644739 AAAAATAAAAATGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 58644798 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 58644799 ACGCTCTAACCAACTGAGCTAATGGGCC 58644826 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 59447600 TGGCCCATGCAGGTCTCGAACCTGCGAGCTTCGCGTTATTAGCACGACGCTCTAACCAAC 59447659 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||||||||||| Sbjct 59447660 TGAGCTAATGGGCCGTC 59447676 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 65404093 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65404152 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 65404153 TGAGCTAATGGGCC 65404166 >seq1 Length=98543444 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| || ||||| ||| |||||||| | | |||||||| ||||||||||||||| Sbjct 95672720 AGAATCAAACAAAAAAAGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 95672662 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 95672661 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 95672627 >seq9 Length=72482091 Score = 109 bits (120), Expect = 3e-19 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || ||| ||| | | ||||||||| | | |||||||| |||||||||||||||| Sbjct 4552577 AATAAAAAAATAATTTATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 4552636 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 4552637 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4552670 >seq5 Length=65875088 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1744677 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1744736 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1744737 TGAGCTAATGGGCC 1744750 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| || |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 4091532 TAAAAAATGTTAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 4091474 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 4091473 CGCTCTAACCAACTGAGCTAATAGGCC 4091447 Score = 98.7 bits (108), Expect = 5e-16 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | ||||| || ||||||| |||||||||||||| Sbjct 5236814 TAAAAAATAA---TGGCCCATGCAGGTCTCGAATCTGCGACCTTTACGTTATTAGCACGA 5236758 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 5236757 CGCTCTAACCAACTGAGCTAATGGGCC 5236731 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481177124020