Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 3e-25
seq4 123 1e-23
seq2 114 7e-21
seq6 113 2e-20
seq10 111 8e-20
seq1 111 8e-20
seq9 109 3e-19
seq5 109 3e-19
>seq3
Length=70787664
Score = 129 bits (142), Expect = 3e-25
Identities = 92/104 (88%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| ||||||| ||||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 3175423 TTAA-AAAAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 3175481
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA-TTGT 11541
|||||||||| |||||||||||||||||||| | || || ||||
Sbjct 3175482 ACGACGCTCTAACCAACTGAGCTAATGGGCCATTGATGACTTGT 3175525
Score = 118 bits (130), Expect = 6e-22
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||| || | ||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 57662572 AAAAAAATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 57662631
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 57662632 GACGCTCTAACCAACTGAGCTAATGGGCC 57662660
Score = 116 bits (128), Expect = 2e-21
Identities = 88/105 (84%), Gaps = 6/105 (6%)
Strand=Plus/Minus
Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484
||| ||| | | ||||||||||||| |||||||| | | |||||||| |||||
Sbjct 4988933 AGGAAAAAAGGGCATTAATAAAAAAT------GGCCCATGCAGGTCTCGAACCTGCGACC 4988880
Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4988879 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4988835
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||| || | ||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 56757201 AAAAAAATATTATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 56757260
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|| ||||| ||||||||||||||||||||
Sbjct 56757261 GATGCTCTAACCAACTGAGCTAATGGGCC 56757289
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 10690603 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10690544
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 10690543 CTGAGCTAATGGGCC 10690529
Score = 109 bits (120), Expect = 3e-19
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| ||
Sbjct 6322253 AAAAAATGAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 6322310
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 6322311 GCTCTAACCAACTGAGCTAATGGGCC 6322336
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 65467337 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65467396
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 65467397 TGAGCTAATGGGCC 65467410
Score = 82.4 bits (90), Expect = 4e-11
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 11481 GACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 6309533 GATCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 6309581
>seq4
Length=66470942
Score = 123 bits (136), Expect = 1e-23
Identities = 89/102 (87%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||||||| | | |||||||| | ||| ||||||||| | | |||||||| ||||||||
Sbjct 239701 AAATATAAACGTTATAAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 239642
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239641 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 239600
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 464058 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 463999
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||||||||
Sbjct 463998 AACTGAGCTAATGGGCC 463982
>seq2
Length=55340444
Score = 114 bits (126), Expect = 7e-21
Identities = 86/101 (85%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
||| | | |||||| |||||| |||||||||| | | |||||||| |||||||||
Sbjct 41298332 AAAAAAAAAATTAAAAAAAAAGT---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 41298388
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 41298389 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 41298429
Score = 113 bits (124), Expect = 2e-20
Identities = 96/114 (84%), Gaps = 5/114 (4%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| ||
Sbjct 33478089 AAAAAATAAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 33478148
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCTAACC 11557
||||| |||||||||||||||||||| || || || |||||| | | ||||||
Sbjct 33478149 GCTCTAACCAACTGAGCTAATGGGCC-TCAAC-AT--TGATTTGT-AGCTAACC 33478197
Score = 113 bits (124), Expect = 2e-20
Identities = 85/99 (86%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 46978029 AAAAAAAGAAATAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 46977970
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539
|||||||| |||||||||||||||||||| | || ||||
Sbjct 46977969 GACGCTCTAACCAACTGAGCTAATGGGCCCT-GATGATT 46977932
Score = 113 bits (124), Expect = 2e-20
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| | | |||||| || ||||||||| | | |||||||| |||||||||||||||
Sbjct 51700314 AGAAATTAGAAAAAAGTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 51700371
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||||||||||||||||||
Sbjct 51700372 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 51700406
Score = 104 bits (114), Expect = 1e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| || ||||||||| | | |||||||| | ||||||||||||||||||| ||
Sbjct 33479945 AAAAAATAAAGATGGCCCATGCAGGTCTCGAACCTGCAACCTTCGCGTTATTAGCACAAC 33480004
Query 11504 GCTCTRACCAACTGAGCTAATGGG 11527
||||| ||||||||||||||||||
Sbjct 33480005 GCTCTAACCAACTGAGCTAATGGG 33480028
>seq6
Length=49751636
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||||| | ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 43426661 AATAAAAAAAC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 43426716
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 43426717 GACGCTCTAACCAACTGAGCTAATGGGCC 43426745
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 31259806 AAATTGGCCCATGCAGGTCCCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31259865
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 31259866 CAACTGAGCTAATGGGCC 31259883
Score = 111 bits (122), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||| || || ||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 48508067 AAAAACATATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 48508126
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 48508127 CTCTAACCAACTGAGCTAATGGGCC 48508151
>seq10
Length=65527505
Score = 111 bits (122), Expect = 8e-20
Identities = 77/88 (88%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| | | | ||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 59045167 ATAAAACAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 59045226
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 59045227 ACGCTCTAACCAACTGAGCTAATGGGCC 59045254
Score = 109 bits (120), Expect = 3e-19
Identities = 77/88 (88%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTG---GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| ||| || ||||||| | | |||||||| ||||||||||||||||||||||
Sbjct 58644739 AAAAATAAAAATGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 58644798
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 58644799 ACGCTCTAACCAACTGAGCTAATGGGCC 58644826
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 59447600 TGGCCCATGCAGGTCTCGAACCTGCGAGCTTCGCGTTATTAGCACGACGCTCTAACCAAC 59447659
Query 11516 TGAGCTAATGGGCCGTC 11532
|||||||||||||||||
Sbjct 59447660 TGAGCTAATGGGCCGTC 59447676
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 65404093 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 65404152
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 65404153 TGAGCTAATGGGCC 65404166
>seq1
Length=98543444
Score = 111 bits (122), Expect = 8e-20
Identities = 82/95 (86%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
||||| || ||||| ||| |||||||| | | |||||||| |||||||||||||||
Sbjct 95672720 AGAATCAAACAAAAAAAGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 95672662
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||| ||||||||||||||||||||
Sbjct 95672661 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 95672627
>seq9
Length=72482091
Score = 109 bits (120), Expect = 3e-19
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| || ||| ||| | | ||||||||| | | |||||||| ||||||||||||||||
Sbjct 4552577 AATAAAAAAATAATTTATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 4552636
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||| ||||||||||||||||||||
Sbjct 4552637 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4552670
>seq5
Length=65875088
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1744677 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1744736
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 1744737 TGAGCTAATGGGCC 1744750
Score = 105 bits (116), Expect = 3e-18
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| || |||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 4091532 TAAAAAATGTTAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 4091474
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||| ||||
Sbjct 4091473 CGCTCTAACCAACTGAGCTAATAGGCC 4091447
Score = 98.7 bits (108), Expect = 5e-16
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| | ||||||||| | | ||||| || ||||||| ||||||||||||||
Sbjct 5236814 TAAAAAATAA---TGGCCCATGCAGGTCTCGAATCTGCGACCTTTACGTTATTAGCACGA 5236758
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||||||||
Sbjct 5236757 CGCTCTAACCAACTGAGCTAATGGGCC 5236731
Lambda K H
0.637 0.409 0.918
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261481177124020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |