Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11 145 1e-30 seq6 140 5e-29 seq9 113 7e-21 seq4 107 3e-19 seq5 84.2 3e-12 >seq11 Length=56302525 Score = 145 bits (160), Expect = 1e-30 Identities = 179/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 51856211 GAGATAACATTCAAGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGGG 51856270 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| | |||||||| || Sbjct 51856271 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGGGTTCTTAAGATCTTTCTTG 51856330 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || ||||| || || |||| | |||||||| || Sbjct 51856331 AAAATGTGATTCGTGATGCTGTTACA-TATACTGAACATGCTAGGAGAAAGACTGTGACG 51856389 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | ||||| | | |||| || |||||| || Sbjct 51856390 GCTATGGATGTTGTTTATGCTCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGAGGT 51856449 Query 16697 TA 16698 || Sbjct 51856450 TA 51856451 Score = 136 bits (150), Expect = 6e-28 Identities = 189/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| || || || ||||| ||||| Sbjct 56043894 GCAAAGCGTCACCGTAAGGTGCTCCGTGATAACATCCAGGGTATTACTAAGCCTGCTATT 56043953 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | || ||||| |||||| | ||| || ||||||| |||| | Sbjct 56043954 CGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATTAGTGGGCTGATCTATGAGGAGACT 56044013 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||||||||| | ||| || || | ||| || | || || ||| Sbjct 56044014 CGTGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGACTCTGTTACTTACACTGAG 56044073 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||| || || | |||||| | || |||||| | || | ||||| Sbjct 56044074 CATGCTAGGAGGAAGACAGTGACTGCTATGGATGTTGTGTATGCACTCAAGAGACAAGGA 56044133 Query 16673 CGTAAGATTTATGGTTTTGGAAGTT 16697 | | | |||||||||||| ||| Sbjct 56044134 AGGACTTTGTATGGTTTTGGAGGTT 56044158 Score = 131 bits (144), Expect = 3e-26 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||| ||||| ||||| ||||| || || | ||| | |||||| | || Sbjct 56026694 TCTCCGTGATAACATTCAAGGTATCACTAAGCCTGCAATTAGGCGTTTAGCTCGTAGAGG 56026635 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || |||| | ||||||| |||| ||||| |||||||||||||| Sbjct 56026634 AGGAGTGAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATCTT 56026575 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || | || || ||||| |||| | ||||| || Sbjct 56026574 TTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAGCATGCTAGGAGGAAGACGGT 56026515 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || |||||| | || | ||||| | | ||||||| || || Sbjct 56026514 CACTGCTATGGATGTTGTGTATGCACTCAAGAGGCAAGGAAGGACTCTTTATGGATTAGG 56026455 Query 16693 AAGTTAA 16699 ||||| Sbjct 56026454 TGGTTAA 56026448 >seq6 Length=49751636 Score = 140 bits (154), Expect = 5e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| || Sbjct 47121311 GACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTGTG 47121252 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | || Sbjct 47121251 AAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGGAG 47121192 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||| || || ||| || |||||||| | | ||||||||||| | Sbjct 47121191 AATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTGCT 47121132 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 47121131 ATGGATGTTGTCTATGC 47121115 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || || || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 47151435 GAGACAATATACAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 47151376 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| | ||||||| |||| |||| ||| ||||||||||| | Sbjct 47151375 TGAAGCGTATCTCTGGTCTCATCTATGAGGAGACCCGTGGTGTGTTGAAGATCTTTTTGG 47151316 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | |||||||| || Sbjct 47151315 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTAACTG 47151256 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| |||||||||| | || | || || | | | ||||| ||||| ||| Sbjct 47151255 CTATGGATGTCGTCTATGCTCTTAAGAGACAGGGAAGGACTCTCTATGGATTTGGCGGTT 47151196 Query 16698 AA 16699 || Sbjct 47151195 AA 47151194 Score = 129 bits (142), Expect = 9e-26 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 47146464 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 47146405 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || ||||||||||| | Sbjct 47146404 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 47146345 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| || |||||||| | | ||||||||||| Sbjct 47146344 AGAATGTGATTCGTGACTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 47146285 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 47146284 CGATGGATGTTGTCTATGC 47146266 Score = 125 bits (138), Expect = 1e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 47115061 GAGACAATATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 47115002 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| | ||||||| |||| |||| || ||||||||||| | Sbjct 47115001 TGAAGCGTATCTCTGGTCTAATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 47114942 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| || | ||| || |||||||| | | |||||||| || Sbjct 47114941 AGAATGTGATTCGTGATTCTGTAACCTACACTGAGCACGCCAGGAGGAAGACTGTTACTG 47114882 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 47114881 CTATGGATGTTGTCTATGC 47114863 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 426981 GAGACAACATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 426922 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| |||| |||||||||| | Sbjct 426921 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGTGTTCTGAAGATCTTTTTGG 426862 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| | | || || |||||||||| | ||||| || || Sbjct 426861 AAAATGTAATTCGTGATTCCGTGACATACACAGAGCACGCTAGGAGAAAGACGGTTACTG 426802 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| | || | ||||| | | |||| || ||||| ||| Sbjct 426801 CTATGGATGTTGTTTATGCGCTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 426742 Query 16698 A 16698 | Sbjct 426741 A 426741 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || |||||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 429067 GAGACAATATTCAAGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 429008 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||| | ||||| |||||||||||||| | Sbjct 429007 TGAAGCGTATATCTGGGTTGATTTACGAAGAAACTCGTGGGGTTTTGAAGATCTTTTTGG 428948 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| | | || || |||||||||| | ||||| || || Sbjct 428947 AAAATGTGATTCGTGATTCCGTTACTTACACAGAGCACGCTAGGAGAAAGACGGTTACTG 428888 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || |||||| | || | ||||| | | |||| || ||||| ||| Sbjct 428887 CTATGGATGTTGTTTATGCACTTAAGAGACAAGGAAGGACCCTTTACGGATTTGGGGGTT 428828 Query 16698 AA 16699 || Sbjct 428827 AA 428826 Score = 114 bits (126), Expect = 2e-21 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | ||| || |||||||| || |||||||| ||||| || || Sbjct 44511076 GCAAAACGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCGATA 44511135 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || |||||| |||||||||| | Sbjct 44511136 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTAATCTATGAAGAAACG 44511195 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| || || | |||| || | ||||| || Sbjct 44511196 AGAGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTATACTGAA 44511255 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 44511256 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 44511315 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | ||||||| ||||| ||| || Sbjct 44511316 AGGACTCTTTATGGGTTTGGTGGTTGAT 44511343 >seq9 Length=72482091 Score = 113 bits (124), Expect = 7e-21 Identities = 149/206 (72%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||||||||| | | || |||||| | ||||| | Sbjct 1181191 GAGACAACATCCAGGGAATCACTAAGCCAGCTATTCACAGGCTTGCTCGTAGGGGTGGTG 1181132 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT----TCGTGATGTTTTGAAGATCTTC 16573 | |||||| ||||||| | ||||||| ||||| |||| || |||||||| || Sbjct 1181131 TGAAGCGTATCTCTGGTCTCATCTATGAGGAGATCGACCCGTGGAGTATTGAAGATATTT 1181072 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || |||||| | || ||| || ||||| || | | ||||||||| Sbjct 1181071 TTGGAGAATGTGATTCATGATTCCGTCACCTACACTGAGCATGCCAGGAGGAAGACTGTC 1181012 Query 16634 ACCTCCATGGATATCGTCTATGCATT 16659 || |||||| ||||||| ||| Sbjct 1181011 ACTATTATGGAT---GTCTATGGATT 1180989 Score = 102 bits (112), Expect = 1e-17 Identities = 146/205 (71%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||||||||| | | || |||||| | ||||| | Sbjct 1188748 GAGACAACATCCAGGGAATCACTAAGCCAGCTATTCACAGGCTTGCTCGTAGGGGTGGTG 1188689 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT----TCGTGATGTTTTGAAGATCTTC 16573 | |||||| ||||| | | ||||||| ||||| |||| || ||||||||||| Sbjct 1188688 TGAAGCGTATCTCTTGTCTCATCTATGAGGAGATCGACCCGTGGAGTATTGAAGATCTTT 1188629 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || || | |||| | || ||| || |||| | | | ||||||||| Sbjct 1188628 TTGGAGAATGTGATTCGTGATTCCGTCACCTACACTCAGCATTCCAGGAGGAAGACTGTC 1188569 Query 16634 ACCTCCATGGATATCGTCTATGCAT 16658 || | |||||| ||||||| || Sbjct 1188568 ACTACTATGGAT---GTCTATGGAT 1188547 >seq4 Length=66470942 Score = 107 bits (118), Expect = 3e-19 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | ||||| || |||||||| || ||||||||||| ||||| Sbjct 3865787 GCAAAACGTCATCGTAAGGTGCTTCGTGACAACATCCAGGGTATCACCAAGCCTGCTATT 3865728 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || ||| ||| | |||||||||| Sbjct 3865727 AGGAGGTTGGCAAGAAGAGGTGGAGTGAAGAGAATCAGTGGGTTGATTTATGAAGAGACA 3865668 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| ||| || | |||| || | ||| || || Sbjct 3865667 AGAGGTGTTCTTAAGATCTTTTTGGAGAACGTGATTCGTGATTCTGTTACCTACACAGAA 3865608 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 3865607 CATGCTAGGAGGAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 3865548 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| || || ||||| Sbjct 3865547 AGAACTCTCTATGGGTTCGGTGGTTAA 3865521 >seq5 Length=65875088 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| || |||||||| || |||||||| || || || || Sbjct 64486489 GCAAAGCGTCACCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAACCGGCGATA 64486548 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | | || | | || ||||| ||| | || ||| ||| |||||||||| | Sbjct 64486549 AGGAGGTTAGCGAGAAGAGGCGGAGTGAAGAGAATCAGTGGGTTGATCTATGAAGAAACA 64486608 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||||||| || | ||| || || | |||| || | || || || Sbjct 64486609 AGAGGTGTTTTGAAGATATTTTTGGAGAATGTGATTCGTGATTCTGTTACTTACACTGAA 64486668 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||| | || ||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 64486669 CATGCTAGGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGG 64486727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072324504485