Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=55340444 Score = 111 bits (122), Expect = 2e-19 Identities = 300/453 (66%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||| ||||| || | |||||| || || || ||||| ||||| |||| || || Sbjct 54782079 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 54782020 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAA 21303 ||||| |||| |||||||| | || || | || || | | |||||| | || Sbjct 54782019 CTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 54781960 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 ||||| || |||||||| ||||| |||| || ||| || || | |||||| || | || Sbjct 54781959 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 54781900 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC---AACAAT 21420 ||||||||| | || || ||||||| || || || |||||| Sbjct 54781899 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 54781840 Query 21421 TATATTTATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | |||| | || | || | || ||| | | |||||| Sbjct 54781839 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACAC 54781785 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 54781784 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 54781725 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAAT 21597 |||||||| || | ||||| ||||||||||| || || | || ||| |||||||| Sbjct 54781724 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGA-ACAGAAGCTTCCGCTGAAGAAAAT 54781666 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| |||||| || || || || || Sbjct 54781665 CCCTTCAACACAAGCAAAAGCCACCAAACGCTC 54781633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531879889649800