Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq1141 389 9e-104 >seq1141 Length=3271 Score = 389 bits (430), Expect = 9e-104 Identities = 553/775 (71%), Gaps = 11/775 (1%) Strand=Plus/Plus Query 3143 GCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGC 3202 |||||| | ||||| |||||||||| ||| | |||||| || | ||| |||| | Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAGAGA 2457 Query 3203 ACG----CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGA 3258 || ||||| | ||||| || ||||||||||| |||||||| ||||| || || Sbjct 2458 GCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGA 2517 Query 3259 GGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGC 3318 ||| || | || || | ||| | || ||||| || ||| ||||||| |||||||| Sbjct 2518 GGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGC 2577 Query 3319 TCAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGA 3378 ||||| ||||| |||||||| ||||||| ||||||||| | || |||| | | || Sbjct 2578 GCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGA 2637 Query 3379 GCTCACGGGCGATCCGATTATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAA 3438 ||| | |||||| ||||| | ||||||| ||||||||||||||| ||||| ||||| || Sbjct 2638 GCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAA 2697 Query 3439 CGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCC 3498 ||| |||||||||||| || ||||||||| |||| | ||||| ||||| ||| | | Sbjct 2698 CGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCA 2757 Query 3499 GAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAA 3558 | |||| |||||| |||||| |||||||| ||||| || ||| | ||||| | Sbjct 2758 GCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCA 2817 Query 3559 GACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGC 3618 ||| || ||| ||||| || ||| | | ||||| |||||| |||||||| ||||| Sbjct 2818 GACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGC 2877 Query 3619 GCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGC 3678 || || ||||| || || || | ||||| | ||| |||||| || Sbjct 2878 GCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC---GC 2934 Query 3679 GCTCGTGC---GCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCT 3735 | | ||| |||| | ||||| ||||| |||||| ||||| || || ||| Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994 Query 3736 CGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAG 3795 || || || || || |||||| ||||||||||| ||||| || |||| | |||||||| Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054 Query 3796 CGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTT 3855 || | ||| |||| ||| ||||| |||||| |||||||| || || || || || Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114 Query 3856 CAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3910 | ||||||| || ||| ||||||||||| ||||| | |||| |||| Sbjct 3115 CCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGGGAGGAC 3169 Score = 188 bits (208), Expect = 2e-43 Identities = 274/384 (71%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 1315 ATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCG 1374 |||||||||||||||||| || ||||| ||||||| |||||| |||||||||| Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60 Query 1375 GCGAACTTCGCCCACATGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTC 1434 | ||||||||||||| ||| || | || | || ||||| ||| ||||| | Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120 Query 1435 TCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTT- 1493 ||||||||||| | | || |||| || |||| | | || || | |||| Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCG---GTCCTTG 177 Query 1494 --CGTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCT 1551 ||||||||||||| || || | ||||||||||||| ||||||| ||| |||||| Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237 Query 1552 TCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATC 1611 || |||| |||| | |||||||| ||| |||||| || ||||||||||||| | Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297 Query 1612 TTCGTTTCGAGCCGCTGTTGCACGGTCGGCTCGACCGCGAATTT--CTTCGACACGTCGC 1669 |||||||| |||||||| || ||| |||| | || |||||| || || ||| Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGT--T 355 Query 1670 CCGTGTCGTTCAGCTTGGCGATTT 1693 | | ||||||| |||||||||| Sbjct 356 CAACGCCGTTCAGTTTGGCGATTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120318706304490