Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq11 100 2e-16
seq10 91.5 1e-13
>seq11
Length=56302525
Score = 100 bits (110), Expect = 2e-16
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||| | || ||||| | || || | || || |||
Sbjct 496333 ATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTTGAGAGTTCT 496392
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | |||||| |||||| ||||| |||||||| ||||| |||||
Sbjct 496393 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 496452
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168
||||||||||| | | || || || || ||||||| | ||| || | || ||||| |
Sbjct 496453 CAGAGACTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 496510
Query 24169 ACATTCAAAAAGAATCTACAATTCAT 24194
|||| |||||||| ||||| |||||
Sbjct 496511 ACATCCAAAAAGAGTCTACCCTTCAT 496536
Score = 86.0 bits (94), Expect = 5e-12
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| | || ||||| | || || | || |||||| |
Sbjct 496561 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 496620
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| || ||| ||||| ||||| || || || || ||
Sbjct 496621 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 496680
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168
||||| ||||| | | || || || || ||||||| | ||| || | || ||||| |
Sbjct 496681 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 496738
Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193
|||| ||||| || || || ||||
Sbjct 496739 ACATCCAAAAGGAGTCCACCCTTCA 496763
>seq10
Length=65527505
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/117 (78%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136
||||| || ||||||||||||||||| ||||| ||||||||||||| | || || ||
Sbjct 463941 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACA 463882
Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
| | ||||||| |||| | | ||||| |||||||| |||||||| || ||||
Sbjct 463881 ATTGGAAGATGGTAGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 463825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429919520687475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |