Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq7 104 2e-17 seq4 100 3e-16 seq10 96.9 3e-15 seq12 89.7 5e-13 >seq1 Length=98543444 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | || |||||||| || |||||||| ||| Sbjct 57604334 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 57604275 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || |||||||||||||| || || Sbjct 57604274 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 57604215 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || || | | || | || |||| ||||| | Sbjct 57604214 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACC 57604155 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 57604154 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 57604108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 131045 CCTTT-TGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 ||||| |||||||||||||| ||| | || || || || |||||||| || ||| | Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 87380333 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCT 131161 ||| || |||||||||||||| || || ||||| ||||| ||| | | || |||| | Sbjct 87380332 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 87380274 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | ||| ||| | || || | || | || | || || || || |||||||| | Sbjct 87380273 TGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCA 87380214 Query 131222 CGAAAATCTGCAT 131234 |||| |||||||| Sbjct 87380213 CGAAGATCTGCAT 87380201 >seq7 Length=68045021 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 66407027 CCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 66406968 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| | || || | ||||||||| | ||| Sbjct 66406967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGAAGGA 66406908 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | || |||| | || | Sbjct 66406907 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 66406848 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || || ||||||||||| Sbjct 66406847 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 66406801 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| ||||| | ||| |||||||| || ||||||||||| ||| Sbjct 66406343 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 66406284 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| | |||||| || ||| |||| | | ||||| ||||| || Sbjct 66406283 -AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGG 66406225 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| || ||| | | || | ||||| | || | Sbjct 66406224 AATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 66406165 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| |||||||| || || |||||||| Sbjct 66406164 CTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | ||||||||||||||| ||||| || || || ||||| ||| Sbjct 66407240 AGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCC 66407181 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||||||||| || | || || | ||||||||| || || || || || ||||| Sbjct 66407180 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 66407121 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || |||| | ||| | || | ||| | |||| Sbjct 66407120 TGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 66407061 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || || || || || || ||||| Sbjct 66407060 TTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 >seq4 Length=66470942 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||||| ||||| || || | || || ||| |||| || || |||||| ||| Sbjct 46321616 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCC 46321557 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || || | || | | |||||||| |||||||||||||||||||| Sbjct 46321556 TCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTC- 46321498 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || | | || | ||| | || | ||||| | || | |||| || | |||| ||| Sbjct 46321497 TTGTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGT 46321438 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCT 131230 ||||| || ||||||||| ||||| |||| Sbjct 46321437 TTTACTGG-TAGAGTTTTCACGAATATCT 46321410 >seq10 Length=65527505 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| || ||||| || ||||||||||| Sbjct 1072265 CCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 1072324 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| || |||| || | |||||||| || || Sbjct 1072325 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 1072384 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || || | | || | Sbjct 1072385 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 1072444 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | |||||| |||||||| |||||| Sbjct 1072445 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATG 1072492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | ||| |||||||| || ||||||||||| Sbjct 1072037 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1072096 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| ||||||||||| || |||| || | |||||||| || || Sbjct 1072097 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 1072156 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | || |||| | || | Sbjct 1072157 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACC 1072216 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || || ||||| ||||| Sbjct 1072217 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAAATTTGCAT 1072263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | ||| |||||||| || ||||||||||| Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || ||||| || || |||| || | ||||||||| || || Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 1071929 ATACCTTCTTTGTC 1071942 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| || | ||| ||||| || || | || ||||| || |||||||||||||| || Sbjct 1072492 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 1072551 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | || || ||| || |||||||| ||||| |||| | | ||||||||| || | Sbjct 1072552 T-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 1072610 Query 131126 GGATTCCTTCTTTGTC 131141 | || ||||| ||||| Sbjct 1072611 GAATGCCTTCCTTGTC 1072626 >seq12 Length=67145203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | || | ||| |||||||| || |||||||| || ||| Sbjct 66287141 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 66287200 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | ||||| |||||||| || ||| | || || ||||||||||| || || Sbjct 66287201 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 66287259 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | || || | ||||| | Sbjct 66287260 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 66287319 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || || || |||||||| Sbjct 66287320 CTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 66287367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994243996800