Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq7 104 2e-17
seq4 100 3e-16
seq10 96.9 3e-15
seq12 89.7 5e-13
>seq1
Length=98543444
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| | ||| | || |||||||| || |||||||| |||
Sbjct 57604334 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 57604275
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| |||||||| || ||| | || |||||||||||||| || ||
Sbjct 57604274 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 57604215
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || || | | || | || |||| ||||| |
Sbjct 57604214 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACC 57604155
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || || ||||| ||||| ||||| ||||||||
Sbjct 57604154 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 57604108
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/193 (73%), Gaps = 5/193 (3%)
Strand=Plus/Minus
Query 131045 CCTTT-TGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102
||||| |||||||||||||| ||| | || || || || |||||||| || ||| |
Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 87380333
Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCT 131161
||| || |||||||||||||| || || ||||| ||||| ||| | | || |||| |
Sbjct 87380332 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 87380274
Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221
|| | ||| ||| | || || | || | || | || || || || |||||||| |
Sbjct 87380273 TGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCA 87380214
Query 131222 CGAAAATCTGCAT 131234
|||| ||||||||
Sbjct 87380213 CGAAGATCTGCAT 87380201
>seq7
Length=68045021
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || | || | |||||||||||| || |||||||| |||
Sbjct 66407027 CCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 66406968
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| | || || | ||||||||| | |||
Sbjct 66406967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGAAGGA 66406908
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||| | | || | || |||| | || |
Sbjct 66406907 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 66406848
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| || ||||| || || || || |||||||||||
Sbjct 66406847 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 66406801
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||| || | ||| ||||| ||||| | ||| |||||||| || ||||||||||| |||
Sbjct 66406343 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 66406284
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || || |||||| | |||||| || ||| |||| | | ||||| ||||| ||
Sbjct 66406283 -AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGG 66406225
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||||| || || ||| || ||| | | || | ||||| | || |
Sbjct 66406224 AATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 66406165
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || || ||||| |||||||| || || ||||||||
Sbjct 66406164 CTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082
||||| || || | ||||||||||||||| ||||| || || || ||||| |||
Sbjct 66407240 AGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCC 66407181
Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142
|| ||||||||||| || | || || | ||||||||| || || || || || |||||
Sbjct 66407180 TCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 66407121
Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202
||| || ||||| | || | || |||| | ||| | || | ||| | ||||
Sbjct 66407120 TGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTT 66407061
Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| ||||| || || || || || || |||||
Sbjct 66407060 TTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
>seq4
Length=66470942
Score = 100 bits (110), Expect = 3e-16
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082
||||||| ||||| || || | || || ||| |||| || || |||||| |||
Sbjct 46321616 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGCGGCCATCC 46321557
Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142
|| |||||||| || || | || | | |||||||| ||||||||||||||||||||
Sbjct 46321556 TCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTC- 46321498
Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201
|| | | || | ||| | || | ||||| | || | |||| || | |||| |||
Sbjct 46321497 TTGTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGACTTCCAGAGTAATGGT 46321438
Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCT 131230
||||| || ||||||||| ||||| ||||
Sbjct 46321437 TTTACTGG-TAGAGTTTTCACGAATATCT 46321410
>seq10
Length=65527505
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | ||| || ||||| || |||||||||||
Sbjct 1072265 CCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCA 1072324
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | |||||| ||||||||||| || |||| || | |||||||| || ||
Sbjct 1072325 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 1072384
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||| | | || | || || | | || |
Sbjct 1072385 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACC 1072444
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | ||| || || || | |||||| |||||||| ||||||
Sbjct 1072445 TCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATG 1072492
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || || || | ||| |||||||| || |||||||||||
Sbjct 1072037 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1072096
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| | |||||| ||||||||||| || |||| || | |||||||| || ||
Sbjct 1072097 AGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGA 1072156
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||| | | || | || |||| | || |
Sbjct 1072157 ATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACC 1072216
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || | ||| || || ||||| |||||
Sbjct 1072217 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCACAAAAATTTGCAT 1072263
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | |||||| || || || | ||| |||||||| || |||||||||||
Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| || ||||| || || |||| || | ||||||||| || ||
Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928
Query 131128 ATTCCTTCTTTGTC 131141
|| |||||||||||
Sbjct 1071929 ATACCTTCTTTGTC 1071942
Score = 86.0 bits (94), Expect = 6e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065
|||||| || | ||| ||||| || || | || ||||| || |||||||||||||| ||
Sbjct 1072492 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGC 1072551
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| | || || ||| || |||||||| ||||| |||| | | ||||||||| || |
Sbjct 1072552 T-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 1072610
Query 131126 GGATTCCTTCTTTGTC 131141
| || ||||| |||||
Sbjct 1072611 GAATGCCTTCCTTGTC 1072626
>seq12
Length=67145203
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066
||||| || | ||| || || | || | ||| |||||||| || |||||||| || |||
Sbjct 66287141 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 66287200
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| | || | ||||| |||||||| || ||| | || || ||||||||||| || ||
Sbjct 66287201 AGCGTTCGGCCA-TCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 66287259
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|| ||||| ||||| || || ||| | | || | || || | ||||| |
Sbjct 66287260 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 66287319
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| ||| || || || || || || || || ||||||||
Sbjct 66287320 CTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 66287367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471994243996800
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