Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 113 4e-20
seq11 100 2e-16
seq1 100 2e-16
seq4 84.2 2e-11
>seq10
Length=65527505
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || | || || | || ||||| ||
Sbjct 1071808 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 1071749
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || | ||| | || | ||| |||||||| || || ||||| ||||
Sbjct 1071748 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 1071690
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | |||||||| ||||| || || ||||||| | || | | ||||||||
Sbjct 1071689 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 1071630
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||| || ||||| || || ||| | ||| | ||||| || |||||
Sbjct 1071629 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 1071581
Score = 109 bits (120), Expect = 5e-19
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| ||||| || || | ||||| | || ||||| |||
Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || | || |||| ||| ||||||||||| |||||||| |||
Sbjct 1071975 GACACCATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 1071919
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || |||||||| || ||| | || || | || || | | ||||||
Sbjct 1071918 CAGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTAC 1071859
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || || || || || || || || || | || |||| ||||
Sbjct 1071858 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 1071807
>seq11
Length=56302525
Score = 100 bits (110), Expect = 2e-16
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| ||||| || || | || || | || || ||| ||
Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| |||||||| || || ||||||| | || ||||| || || ||||| || |||
Sbjct 497077 GATACTATCGA--CAATGTTAAAGCAAAGATACA-AGACAAGGAGGGTATTCCTCCAGAC 497133
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | | || ||||| || || ||| | || |||| | || ||| ||||||
Sbjct 497134 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 497193
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| |||||||| || || || | || || | || ||||| ||
Sbjct 497194 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 497243
Score = 100 bits (110), Expect = 2e-16
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | |||||| | || || ||| ||
Sbjct 497473 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 497532
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||||||| | ||| ||||| || || ||||| || |||
Sbjct 497533 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 497589
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || |||||| | || |||| | ||| | | || |||
Sbjct 497590 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTAC 497649
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || || || ||| | ||| | | | ||||||||
Sbjct 497650 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497699
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | ||||| || ||
Sbjct 496789 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 496848
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || ||||| | |||| ||| || || ||||||||||| || |||||
Sbjct 496849 GATACTATTGACAATGTGAAGGCCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 496907
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || ||||||||||| ||| | || |||| | || ||| || |||||
Sbjct 496908 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 496967
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| ||||| || || ||||| | || ||
Sbjct 496968 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 497000
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||||||||| || || | || ||| | || || ||| ||
Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||||||| | ||| ||||| || || ||||| || |||
Sbjct 497305 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 497361
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || |||||| | || || | | ||| | | || |||
Sbjct 497362 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTAC 497421
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || || || ||| | ||| | | | ||||||||
Sbjct 497422 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/213 (70%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || | ||| ||||| | || || || ||||||| | ||||| || ||
Sbjct 487283 ATGCAGATCTCTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 487224
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| | |||| ||| || || ||||||||||| || |||||
Sbjct 487223 GATACAATTGACAACGTGAAGACCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 487165
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || ||| ||||||| ||| | || |||| | || ||| || |||||
Sbjct 487164 GCAGAGACTGATCTTT-CCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 487106
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| ||||| ||||| ||||| | || ||
Sbjct 487105 TATTCAGAAAGAGTCCACCTTACATCTTGTTCT 487073
>seq1
Length=98543444
Score = 100 bits (110), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || | ||||| | || || ||||| ||
Sbjct 57604108 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 57604167
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || |||| || | || ||||| ||||||||||| || |||
Sbjct 57604168 GACACCATCGA--CAATGTGAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 57604224
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| |||
Sbjct 57604225 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 57604284
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || ||| | |||||
Sbjct 57604285 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 57604319
>seq4
Length=66470942
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/216 (70%), Gaps = 10/216 (5%)
Strand=Plus/Plus
Query 25001 GCAA-ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059
|||| ||||| || || ||| | ||| ||||| |||| || | ||||| || | || |
Sbjct 46321407 GCAAGATATTCGTGAAAACTCT-ACCAGTAAAACCATTACTCTGGAAGTCGAAT--TCAG 46321463
Query 25060 --ACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
| |||||||| || || ||| || || ||||||||||| || || || |||
Sbjct 46321464 CAATACTATCGA--CAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCCTCCAGAC 46321521
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | |||||||| || || || | || |||| ||||| ||| || |||
Sbjct 46321522 CAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGGCGGACTAC 46321581
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
| || || ||| |||| || |||||| ||||||||
Sbjct 46321582 AGCATCCAGAAAAAATCAACTCTACATCTAGTGCTA 46321617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433311390673175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |