Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 113 4e-20 seq11 100 2e-16 seq1 100 2e-16 seq4 84.2 2e-11 >seq10 Length=65527505 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || | || || | || ||||| || Sbjct 1071808 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 1071749 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| |||||||| || || ||||| |||| Sbjct 1071748 CGACACCATTGACAACGTAAAGGCCAAGATTCAG-GACAAAGAGGGTATCCCACCAGACC 1071690 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| ||||| || || ||||||| | || | | |||||||| Sbjct 1071689 AGCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACA 1071630 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||| || || ||| | ||| | ||||| || ||||| Sbjct 1071629 ATATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 1071581 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | || ||||| ||| Sbjct 1072035 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 1071976 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||||||||| |||||||| ||| Sbjct 1071975 GACACCATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAAGAAGGTATTCCACCAGAC 1071919 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| || ||| | || || | || || | | |||||| Sbjct 1071918 CAGCAGAGGTTGATCTTTGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCTGATTAC 1071859 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || || || || || | || |||| |||| Sbjct 1071858 AACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAA 1071807 >seq11 Length=56302525 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || || | || || | || || ||| || Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| || || ||||||| | || ||||| || || ||||| || ||| Sbjct 497077 GATACTATCGA--CAATGTTAAAGCAAAGATACA-AGACAAGGAGGGTATTCCTCCAGAC 497133 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || ||| | || |||| | || ||| |||||| Sbjct 497134 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTAC 497193 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || | || || | || ||||| || Sbjct 497194 AACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGG 497243 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | |||||| | || || ||| || Sbjct 497473 ATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCA 497532 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 497533 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 497589 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || |||| | ||| | | || ||| Sbjct 497590 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTAC 497649 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 497650 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497699 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || Sbjct 496789 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 496848 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || ||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 496849 GATACTATTGACAATGTGAAGGCCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 496907 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| ||| | || |||| | || ||| || ||||| Sbjct 496908 GCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 496967 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || ||||| | || || Sbjct 496968 TATTCAGAAAGAGTCTACCTTACATCTTGTTCT 497000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || ||| | || || ||| || Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||||||| | ||| ||||| || || ||||| || ||| Sbjct 497305 GATACCATTGA--CAATGTGAAAGCAAAGATTCA-AGACAAGGAGGGTATTCCCCCAGAC 497361 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || |||||| | || || | | ||| | | || ||| Sbjct 497362 CAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTAC 497421 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || ||| | ||| | | | |||||||| Sbjct 497422 AACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || | ||| ||||| | || || || ||||||| | ||||| || || Sbjct 487283 ATGCAGATCTCTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 487224 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 487223 GATACAATTGACAACGTGAAGACCAAAATTCAG-GATAAGGAAGGGATTCCTCCAGACCA 487165 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||| ||||||| ||| | || |||| | || ||| || ||||| Sbjct 487164 GCAGAGACTGATCTTT-CCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAA 487106 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| ||||| ||||| | || || Sbjct 487105 TATTCAGAAAGAGTCCACCTTACATCTTGTTCT 487073 >seq1 Length=98543444 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| | || || ||||| || Sbjct 57604108 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCTTCC 57604167 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||||||||| || ||| Sbjct 57604168 GACACCATCGA--CAATGTGAAAGCCAAGATCCAG-GACAAGGAAGGGATTCCCCCAGAC 57604224 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| ||||| || || | || |||| ||| ||| | | ||| ||| Sbjct 57604225 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 57604284 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | ||||| Sbjct 57604285 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 57604319 >seq4 Length=66470942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/216 (70%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 25001 GCAA-ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTG 25059 |||| ||||| || || ||| | ||| ||||| |||| || | ||||| || | || | Sbjct 46321407 GCAAGATATTCGTGAAAACTCT-ACCAGTAAAACCATTACTCTGGAAGTCGAAT--TCAG 46321463 Query 25060 --ACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | |||||||| || || ||| || || ||||||||||| || || || ||| Sbjct 46321464 CAATACTATCGA--CAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCCTCCAGAC 46321521 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | |||||||| || || || | || |||| ||||| ||| || ||| Sbjct 46321522 CAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGGCGGACTAC 46321581 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || || ||| |||| || |||||| |||||||| Sbjct 46321582 AGCATCCAGAAAAAATCAACTCTACATCTAGTGCTA 46321617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311390673175