Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 210 2e-49 seq1 91.5 2e-13 seq8 89.7 6e-13 seq12 84.2 2e-11 seq6 84.2 2e-11 seq3 84.2 2e-11 seq10 82.4 9e-11 seq9 82.4 9e-11 seq5 82.4 9e-11 >seq2 Length=55340444 Score = 210 bits (232), Expect = 2e-49 Identities = 592/894 (66%), Gaps = 15/894 (2%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || ||||||||| | || ||||||||||| ||||| |||| ||| ||| Sbjct 54782079 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 54782020 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | || |||||||| || || || ||| ||| ||| | | ||| Sbjct 54782019 CTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 54781960 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||||| ||||||||||| |||||||| | | ||||||||| | ||||||||| | || Sbjct 54781959 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 54781900 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | | ||| || ||||| || || ||| || | || || | || || ||| | | Sbjct 54781899 A-GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAA 54781841 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCA 93097 || | | |||| || | || || || | | || |||| | || |||||| Sbjct 54781840 TTCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCA 54781782 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || || || ||||||||||||| ||| || |||||||| ||| ||||| || || Sbjct 54781781 AAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGC 54781722 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | | || ||||| || | ||||||||| ||| || || || || || || ||| Sbjct 54781721 ATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCT 54781662 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || ||||| ||||| | ||| || || ||| || |||| | | ||||| Sbjct 54781661 TCAACACAAGCAAAAGCCACCAAACGCTCCGCGAAAGTTTCGGACCCATCG---ATCCAA 54781605 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | ||||| | || || || | || |||||| | ||| || || || || | Sbjct 54781604 CGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAAT 54781545 Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | |||| ||||| ||||| | || | | || | ||||| || || Sbjct 54781544 TTG-CTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 54781486 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| |||||| || || |||||||| || |||||| | ||| || | | ||| || Sbjct 54781485 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGAC 54781426 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || || | |||| || || || || || || || || |||||||| Sbjct 54781425 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 54781366 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | ||| | || ||||| | ||| | | | || || ||||| | | || Sbjct 54781365 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGT-GACGAG 54781307 Query 93577 -ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 ||| | || |||||||||||||| | ||||| || ||||| ||||| ||||||| Sbjct 54781306 TATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTTGTACA 54781247 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 | ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 54781246 TTTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 54781194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 50174392 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 50174335 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 50174334 GCGTGGGTTCAAATCCCACTTCTGACA 50174308 >seq1 Length=98543444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3280637 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3280580 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGA-ATTTTTG 126367 ||| || |||||| ||| || ||| || | ||| ||||||| Sbjct 3280579 TTCAAATCCCACAGCTGTCATATTTTTTTGGGACATTTTTG 3280539 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 97183446 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 97183503 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 97183504 GCGTGGGTTCAAATCCCACTTCTGACA 97183530 >seq8 Length=65866657 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 57151607 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 57151666 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| ||||| ||| ||||| Sbjct 57151667 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTATT 57151699 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 2625704 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 2625763 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| || ||||| ||||| ||||||| Sbjct 2625764 TGGGTTCAAATCCCACTTCTGAC-AATTATT 2625793 >seq12 Length=67145203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 65260932 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 65260873 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||| ||||| || Sbjct 65260872 GTGGGTTCAAATCCCACTTCTGACATTTTATTTTT 65260838 >seq6 Length=49751636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 43964707 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 43964764 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 43964765 GGGTTCAAATCCCACAGCTGTCAATTTTTT 43964794 >seq3 Length=70787664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 63663985 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 63663928 Query 126328 TTCGAACCCCACACCTGACAAATTAT--TATTGGAATTTTTGTT 126369 ||| || |||||| ||| || |||| ||| ||||||| || Sbjct 63663927 TTCAAATCCCACAGCTGTCATTTTATCCAATTTTAATTTTTTTT 63663884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 64327014 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 64327071 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 64327072 GGGTTCAAATCCCACAGCTGTCAATTTTTT 64327101 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4279687 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4279630 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 4279629 TTCAAATCCCACAGCTGTCAATTTTTT 4279603 >seq10 Length=65527505 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 257334 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 257277 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 257276 GGGTTCAAATCCCACAGCTGTCAATTT 257250 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3326520 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3326577 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||||| Sbjct 3326578 TTCAAATCCCACAGCTGTCATTTTATT 3326604 >seq9 Length=72482091 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3492516 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3492459 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| | | || || || |||| Sbjct 3492458 TTCAAATCCCACAGCTGTCAATAATTTTTTTCGATTTTT 3492420 >seq5 Length=65875088 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 59153517 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 59153574 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 59153575 TTCAAATCCCACAGCTGTCAATTT 59153598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556838908409800