Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 2e-15 seq10 96.9 2e-15 >seq11 Length=56302525 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||||| || || || || ||||| |||| || || Sbjct 497017 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 497076 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 497077 GATACTATCGACAATGTTAAAGCAAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAG 497136 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 497137 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAAC 497196 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 497197 ATTCAGAAAGAATCAACCCTGCA 497219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || || ||||| ||| | ||| ||| | Sbjct 496789 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 496848 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| || || | ||| | |||| Sbjct 496849 GATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 496908 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| ||||| ||||| || ||| || || |||| || |||||| Sbjct 496909 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 496968 Query 22014 ATTCAGAAGGAATCTAC 22030 |||||||| || ||||| Sbjct 496969 ATTCAGAAAGAGTCTAC 496985 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || || ||||| |||| || || Sbjct 497245 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 497304 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| ||| || || |||||| | || | ||||| Sbjct 497305 GATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 497364 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||||||||| |||||||| || || | ||| | || || ||||| Sbjct 497365 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTGCAGACTACAAC 497424 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || ||||| ||| |||| || ||||| ||||||| Sbjct 497425 ATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGG 497471 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||| | || || || |||||| | || | |||||||| | | ||||||||| Sbjct 497552 AAGCAAAGA-TTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCT 497610 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 || |||||||| || ||| | ||| | || || ||||| || |||||||| || ||| Sbjct 497611 GGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACT 497670 Query 22032 CTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||| |||| || ||||| ||||||| Sbjct 497671 CTCCATCTGGTGTTGCGTTTGAGAGGAGG 497699 >seq10 Length=65527505 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || || || ||||| || |||||| | || |||| | | Sbjct 1071808 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 1071749 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | | ||| || ||| || ||||||||| | || | |||| Sbjct 1071748 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 1071689 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || ||||||||||| || | |||||| || || | ||||||||||| Sbjct 1071688 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 1071629 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| || |||||| | || || Sbjct 1071628 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 1071596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358111073188330