Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq10 113 4e-20 seq11 109 5e-19 seq12 93.3 4e-14 seq7 82.4 6e-11 >seq1 Length=98543444 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 |||| |||||||||||||| ||| | |||||| |||||| || || || || ||| || Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | | Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 87380272 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| | ||||| || || | || | ||| || || || |||||||| || Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 87380211 AAGATCTGCAT 87380201 >seq10 Length=65527505 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| || | | || || || | || || ||||| |||||||||||||| Sbjct 1072490 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 1072549 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||||||| |||||||| || || || || |||| || | ||| ||||| || Sbjct 1072550 GCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGG 1072608 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 1072609 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTC 1072668 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 1072669 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| || ||||| || | ||| || ||||| || |||||||| |||||||| Sbjct 65066503 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 65066562 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||| | || |||||| ||| | | | | | ||||| || | || Sbjct 65066563 AAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGG 65066622 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC--TGTTCAACGGTGTCGGTGGA---- 114328 ||| ||||||||||| ||||| |||| |||| | |||| || ||||| |||| Sbjct 65066623 AATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTT-AATGGTGT---TGGAACTC 65066677 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || |||| || | || || || | |||||||| ||||| || ||||| Sbjct 65066678 TTC-ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 |||| ||| ||||| || | | || | || | ||||| || ||||| |||||||| Sbjct 1071347 CAAAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAG 1071406 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || ||| | |||||||||||| || || || |||| || | ||| |||||| Sbjct 1071407 TCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCC 1071466 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || || || || || ||||| ||| || || | | |||| ||| || | Sbjct 1071467 GGTGGGATTCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATGGTATCAGAACTC 1071526 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| || | ||||| || |||| || || |||||||||||||| Sbjct 1071527 TCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 1071579 >seq11 Length=56302525 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| |||||||| ||||||||||| Sbjct 496562 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 496503 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 496502 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 496443 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||| | | |||| |||||| | || Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCA 496383 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 496382 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| ||||||||||| Sbjct 496790 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 496731 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 496730 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 496671 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || ||| | | || | |||||| | | ||| Sbjct 496670 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 496611 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || |||||||||||||| ||||| || ||||| Sbjct 496610 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 496561 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | ||| Sbjct 497685 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCATC 497626 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 497625 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 497566 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 497565 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATTGT 497506 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| || ||||| |||||||| Sbjct 497505 CTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || || || || || |||||||| || | ||| | || Sbjct 497457 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCGTC 497398 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||||| |||| | |||||||||||| || ||||| || || ||||| Sbjct 497397 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 497338 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||||| ||| | | |||| ||| || | || || |||| || | || Sbjct 497337 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 497278 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| ||| || |||||||| |||||| Sbjct 497277 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || ||||| ||||||||||| Sbjct 487282 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 487341 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || || ||||||||| ||||| ||||| |||| || | ||| ||||| || Sbjct 487342 GTAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 487401 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 | ||| ||||| ||||| |||| || ||| | | |||| |||||| | | || Sbjct 487402 GAAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCA 487461 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTT 114366 || || | || | || || ||||||||||||| Sbjct 487462 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 487495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | ||||| || | ||| ||||||||||| Sbjct 487498 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 487556 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||||||| ||||| ||||| |||| || | ||| || || ||| Sbjct 487557 GCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGA 487616 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| ||||| | ||| ||||| | | ||| Sbjct 487617 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCACTAGTGTCAGAGCTCTCG 487676 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGT-TTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| |||||||| Sbjct 487677 ACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCTGCAT 487727 >seq12 Length=67145203 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | || || ||| || || || ||||| Sbjct 66287171 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 66287229 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || | ||||| ||||| || ||||||||||| ||||| |||||| || Sbjct 66287230 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 66287289 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || || || |||| ||| | || ||||| ||||| || Sbjct 66287290 AACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGT 66287349 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 66287350 CTTCACAAAGATCTGCAT 66287367 >seq7 Length=68045021 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || | || | || || || || || |||||||| ||| Sbjct 66407030 ATACCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 66406971 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || ||||||||| | || | | ||| ||||| | | Sbjct 66406970 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGAA 66406911 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| |||||||| | ||| Sbjct 66406910 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCC 66406851 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| || || || |||||||||||||| Sbjct 66406850 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 66406801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420118296379740