Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 3e-21
seq10 113 4e-20
seq11 109 5e-19
seq12 93.3 4e-14
seq7 82.4 6e-11
>seq1
Length=98543444
Score = 116 bits (128), Expect = 3e-21
Identities = 142/191 (74%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 114193 CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|||| |||||||||||||| ||| | |||||| |||||| || || || || ||| ||
Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||| |||||||| ||||| ||||| ||||| |||||| ||| | |
Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 87380272
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| |||||| | ||||| || || | || | ||| || || || |||||||| ||
Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 87380211 AAGATCTGCAT 87380201
>seq10
Length=65527505
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
|| || ||||| || | | || || || | || || ||||| ||||||||||||||
Sbjct 1072490 ATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCA 1072549
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
||| | ||||||| |||||||| || || || || |||| || | ||| ||||| ||
Sbjct 1072550 GCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGG 1072608
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||||||||||| ||||| ||||| ||| | | |||| |||||| | | |||
Sbjct 1072609 GGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCTTTC 1072668
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || || || ||||| ||||| ||||||||
Sbjct 1072669 CACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719
Score = 86.0 bits (94), Expect = 5e-12
Identities = 163/234 (70%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| |||| || ||||| || | ||| || ||||| || |||||||| ||||||||
Sbjct 65066503 ACCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGC 65066562
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| ||| || ||| | || |||||| ||| | | | | | ||||| || | ||
Sbjct 65066563 AAGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGG 65066622
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC--TGTTCAACGGTGTCGGTGGA---- 114328
||| ||||||||||| ||||| |||| |||| | |||| || ||||| ||||
Sbjct 65066623 AATTCCTTCTTTGTCTTCAATC-TTTGCTTTAACATTGTT-AATGGTGT---TGGAACTC 65066677
Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || |||| || | || || || | |||||||| ||||| || |||||
Sbjct 65066678 TTC-ACATCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCAT 65066730
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209
|||| ||| ||||| || | | || | || | ||||| || ||||| ||||||||
Sbjct 1071347 CAAAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAG 1071406
Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269
|| || ||| | |||||||||||| || || || |||| || | ||| ||||||
Sbjct 1071407 TCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAAGATCAGTCTCTGCTGGTCC 1071466
Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329
|| || || || || ||||| ||| || || | | |||| ||| || |
Sbjct 1071467 GGTGGGATTCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATGGTATCAGAACTC 1071526
Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||| || | ||||| || |||| || || ||||||||||||||
Sbjct 1071527 TCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 1071579
>seq11
Length=56302525
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | ||| | ||||| |||||||| |||||||||||
Sbjct 496562 ATCCCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCA 496503
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||| ||||| ||||| |||| || | ||| || || |||
Sbjct 496502 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGA 496443
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| |||||| ||| | | |||| |||||| | ||
Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCA 496383
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || ||||| || || || ||||| ||||||||
Sbjct 496382 ACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || ||||| |||||||||||
Sbjct 496790 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 496731
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||||||||| ||||| ||||| |||| || | ||| ||||| ||
Sbjct 496730 GCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 496671
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| ||||| ||||| ||| || ||| | | || | |||||| | | |||
Sbjct 496670 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCG 496611
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || |||||||||||||| ||||| || |||||
Sbjct 496610 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 496561
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || | ||| | || || || || || |||||||| || | ||| | |||
Sbjct 497685 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCATC 497626
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||||||||||||||||| |||| | |||||||||||| || ||||| || || |||||
Sbjct 497625 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 497566
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||||| ||| | | |||| ||| || | || || |||| || | ||
Sbjct 497565 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTGATTGT 497506
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||| ||| || ||||| ||||||||
Sbjct 497505 CTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || | ||| | || || || || || |||||||| || | ||| | ||
Sbjct 497457 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCGTC 497398
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||||||||||||||||| |||| | |||||||||||| || ||||| || || |||||
Sbjct 497397 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 497338
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||||| ||| | | |||| ||| || | || || |||| || | ||
Sbjct 497337 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 497278
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || |||| ||| || |||||||| ||||||
Sbjct 497277 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || ||||| |||||||||||
Sbjct 487282 ATACCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCA 487341
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| | || || ||||||||| ||||| ||||| |||| || | ||| ||||| ||
Sbjct 487342 GTAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 487401
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
| ||| ||||| ||||| |||| || ||| | | |||| |||||| | | ||
Sbjct 487402 GAAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCA 487461
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTT 114366
|| || | || | || || |||||||||||||
Sbjct 487462 ACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 487495
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || | ||| | ||||| || | ||| |||||||||||
Sbjct 487498 ATTCCACCACGTAGACGGAGGACAAGATGGAG-GTAGACTCGTCTTGGATGTTGTAATCA 487556
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || | ||||||||| ||||| ||||| |||| || | ||| || || |||
Sbjct 487557 GCAACTGTTTGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGA 487616
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||| ||||| |||||| ||||| | ||| ||||| | | |||
Sbjct 487617 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTTACATTATCACTAGTGTCAGAGCTCTCG 487676
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGT-TTTTACAAAAATCTGCAT 114382
|| || | || | || || ||||| || || || ||||| ||||||||
Sbjct 487677 ACCTCAAGAGTGATGGTCTTTCCGGTGAGCGTCTTAAACAAATATCTGCAT 487727
>seq12
Length=67145203
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
|| || || || || |||||||| || ||| | || || ||| || || || |||||
Sbjct 66287171 GTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACC 66287229
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| | || | ||||| ||||| || ||||||||||| ||||| |||||| ||
Sbjct 66287230 GGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 66287289
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| |||||| | || || || |||| ||| | || ||||| ||||| ||
Sbjct 66287290 AACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGT 66287349
Query 114365 TTTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 66287350 CTTCACAAAGATCTGCAT 66287367
>seq7
Length=68045021
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | || | || | || || || || || |||||||| |||
Sbjct 66407030 ATACCACCACGTAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 66406971
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || || || || ||||||||| | || | | ||| ||||| | |
Sbjct 66406970 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGAA 66406911
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | |||| |||||||| | |||
Sbjct 66406910 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCC 66406851
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || ||||| || || || ||||||||||||||
Sbjct 66406850 ACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAAATCTGCAT 66406801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420118296379740
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