Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 1e-18
>seq2
Length=55340444
Score = 109 bits (120), Expect = 1e-18
Identities = 343/527 (65%), Gaps = 16/527 (3%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| || |||||||| |||||||| || |||||||| || |||||||||
Sbjct 54781360 CTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 54781419
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541
||||| || ||| ||||| || ||| ||||| || ||||| || ||||| |||||
Sbjct 54781420 AAAGATGTCCAGGTTGCCGAGGCTCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 54781478
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| || || ||| ||||| ||| | | |||||||| |||| | | |||
Sbjct 54781479 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGA--- 54781535
Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657
|| | || ||||| || || ||||| || || || | | ||||||||| | |
Sbjct 54781536 -AAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAAT 54781594
Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
|||| || |||||||| | |||| ||| |||| ||| | |||| || |||
Sbjct 54781595 GGGCCCTTCGTTGGATCGATGGGTCCGA---AACTTTCGCGGAGCGTTTGGTGGCTTTTG 54781651
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
| || || || || |||||| || |||| || || || ||| | || |
Sbjct 54781652 CTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 54781711
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
|| || ||||| ||| | |||||||| || || | || || ||||| || |||
Sbjct 54781712 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 54781771
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | || ||||| || | || | | || || ||| |||| | ||||||
Sbjct 54781772 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 54781828
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
| ||| ||| || | | || || |||||||| || | |||||||
Sbjct 54781829 GAGTCAGGGGAATTGTTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 54781875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944302075665200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |