Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 109 1e-18 >seq2 Length=55340444 Score = 109 bits (120), Expect = 1e-18 Identities = 343/527 (65%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| || |||||||| || ||||||||| Sbjct 54781360 CTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 54781419 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || ||| ||||| || ||| ||||| || ||||| || ||||| ||||| Sbjct 54781420 AAAGATGTCCAGGTTGCCGAGGCTCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 54781478 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || || ||| ||||| ||| | | |||||||| |||| | | ||| Sbjct 54781479 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATCAAGGATTCTGACGA--- 54781535 Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | || ||||| || || ||||| || || || | | ||||||||| | | Sbjct 54781536 -AAAGAGCAAATTGTTCCGTGCAATTGAGACAATCCCTTGTGTTGAAAAGAAGGCGAAAT 54781594 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || |||||||| | |||| ||| |||| ||| | |||| || ||| Sbjct 54781595 GGGCCCTTCGTTGGATCGATGGGTCCGA---AACTTTCGCGGAGCGTTTGGTGGCTTTTG 54781651 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || |||||| || |||| || || || ||| | || | Sbjct 54781652 CTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 54781711 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||| | |||||||| || || | || || ||||| || ||| Sbjct 54781712 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 54781771 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || ||||| || | || | | || || ||| |||| | |||||| Sbjct 54781772 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 54781828 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | ||| ||| || | | || || |||||||| || | ||||||| Sbjct 54781829 GAGTCAGGGGAATTGTTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 54781875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944302075665200