Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq1141 455 7e-124 >seq1141 Length=3271 Score = 455 bits (504), Expect = 7e-124 Identities = 607/839 (72%), Gaps = 16/839 (2%) Strand=Plus/Plus Query 3131 GCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGC 3190 |||||| | ||||| |||||||||| ||| | |||||| || | ||| |||| | Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAGAGA 2457 Query 3191 ACG----CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGA 3246 || ||||| | ||||| || ||||||||||| |||||||| ||||| || || Sbjct 2458 GCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGA 2517 Query 3247 GGCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATCTTCCTATCGGCCAGCAAGGC 3306 ||| || | || ||| | ||| | ||||||||||| ||| | |||||||||||||| Sbjct 2518 GGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGC 2577 Query 3307 GCAGGCGCACGTCTTCAAGCAATACATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGA 3366 |||||| ||||| |||||||||||||||| ||||||||| ||||| |||| ||| || Sbjct 2578 GCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGA 2637 Query 3367 GCTCACGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAA 3426 ||| | |||||| ||||| | ||||||| ||| ||||||||||| ||||| || || || Sbjct 2638 GCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAA 2697 Query 3427 CGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCC 3486 ||| || ||||||||| |||||||||||| ||||| | ||||| ||||| ||| | | Sbjct 2698 CGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCA 2757 Query 3487 GAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAA 3546 | |||| ||| || |||||| || || || ||||| || ||| | ||||| | Sbjct 2758 GCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCA 2817 Query 3547 GACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGC 3606 ||| || ||| ||||| ||||| | | ||||| |||| | |||||||| ||||| Sbjct 2818 GACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGC 2877 Query 3607 GCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGC 3666 || || ||||| || || || | ||||| | ||| |||||| || Sbjct 2878 GCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC---GC 2934 Query 3667 GCTCGTGC---GCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCT 3723 | | ||| |||| | ||||| ||||| |||||| ||||| || || ||| Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994 Query 3724 CGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAG 3783 ||||| || || || |||||||||||||||||| ||||| || |||| | || ||||| Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054 Query 3784 CGCCGAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTT 3843 || | ||| |||| |||||||||||||||| ||||||||| || || || || || Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114 Query 3844 CAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTT 3903 | ||||||| || ||| ||||||||||| ||||||| |||| |||| | Sbjct 3115 CCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGGGAGGAC----T 3170 Query 3904 TTCGCCGCTGCT-GCTGCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCG 3961 | |||| || | || || || |||||| |||| ||||| ||||| |||||||| ||| Sbjct 3171 TCCGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCCG 3229 Score = 188 bits (208), Expect = 2e-43 Identities = 274/384 (71%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 1303 ATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCG 1362 |||||||||||||||||| || ||||| ||||||| |||||| ||||||||| Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60 Query 1363 GCGAACTTCGCCCATGCGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTC 1422 | |||||||||||| ||||| || | || | || ||||| ||| ||||| | Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120 Query 1423 TCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTT- 1481 ||||||||||| | | || |||| || |||| | | || || | |||| Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCG---GTCCTTG 177 Query 1482 --CGTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCT 1539 ||||||||||||| || || | ||||||||||||| ||||||| ||| |||||| Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237 Query 1540 TCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATC 1599 || |||| |||| | |||||||| ||| |||||| || ||||||||||||| | Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297 Query 1600 TTCGTTTCGAGCCGCTGTTGCACGGTCGGCTCGACCGCGAATTT--CTTCGACACGTCGC 1657 |||||||| |||||||| || ||| |||| | || |||||| || || ||| Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGT--T 355 Query 1658 CCGTGTCGTTCAGCTTGGCGATTT 1681 | | ||||||| |||||||||| Sbjct 356 CAACGCCGTTCAGTTTGGCGATTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114245333134470