Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_009234.1
Length=35741
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 455 7e-124
>seq1141
Length=3271
Score = 455 bits (504), Expect = 7e-124
Identities = 607/839 (72%), Gaps = 16/839 (2%)
Strand=Plus/Plus
Query 3131 GCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGC 3190
|||||| | ||||| |||||||||| ||| | |||||| || | ||| |||| |
Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAGAGA 2457
Query 3191 ACG----CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGA 3246
|| ||||| | ||||| || ||||||||||| |||||||| ||||| || ||
Sbjct 2458 GCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGA 2517
Query 3247 GGCGCTCGTCGACGCGCTCGACACCGACCGCAATCAGATCTTCCTATCGGCCAGCAAGGC 3306
||| || | || ||| | ||| | ||||||||||| ||| | ||||||||||||||
Sbjct 2518 GGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGC 2577
Query 3307 GCAGGCGCACGTCTTCAAGCAATACATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGA 3366
|||||| ||||| |||||||||||||||| ||||||||| ||||| |||| ||| ||
Sbjct 2578 GCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGA 2637
Query 3367 GCTCACGGGCGACCCGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAA 3426
||| | |||||| ||||| | ||||||| ||| ||||||||||| ||||| || || ||
Sbjct 2638 GCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAA 2697
Query 3427 CGCGCGTACCGCGCAGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCC 3486
||| || ||||||||| |||||||||||| ||||| | ||||| ||||| ||| | |
Sbjct 2698 CGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCA 2757
Query 3487 GAAGTTCCGCGAGTTGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAA 3546
| |||| ||| || |||||| || || || ||||| || ||| | ||||| |
Sbjct 2758 GCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCA 2817
Query 3547 GACCTACTTCAGCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGC 3606
||| || ||| ||||| ||||| | | ||||| |||| | |||||||| |||||
Sbjct 2818 GACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGC 2877
Query 3607 GCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGC 3666
|| || ||||| || || || | ||||| | ||| |||||| ||
Sbjct 2878 GCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC---GC 2934
Query 3667 GCTCGTGC---GCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCT 3723
| | ||| |||| | ||||| ||||| |||||| ||||| || || |||
Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994
Query 3724 CGACGCGATGGCGGGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAG 3783
||||| || || || |||||||||||||||||| ||||| || |||| | || |||||
Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054
Query 3784 CGCCGAGGAATTCGCGAACCTGCTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTT 3843
|| | ||| |||| |||||||||||||||| ||||||||| || || || || ||
Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114
Query 3844 CAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTT 3903
| ||||||| || ||| ||||||||||| ||||||| |||| |||| |
Sbjct 3115 CCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGGGAGGAC----T 3170
Query 3904 TTCGCCGCTGCT-GCTGCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCG 3961
| |||| || | || || || |||||| |||| ||||| ||||| |||||||| |||
Sbjct 3171 TCCGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCCG 3229
Score = 188 bits (208), Expect = 2e-43
Identities = 274/384 (71%), Gaps = 10/384 (3%)
Strand=Plus/Plus
Query 1303 ATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGTTGGAAGTCG 1362
|||||||||||||||||| || ||||| ||||||| |||||| |||||||||
Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60
Query 1363 GCGAACTTCGCCCATGCGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTC 1422
| |||||||||||| ||||| || | || | || ||||| ||| ||||| |
Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120
Query 1423 TCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTT- 1481
||||||||||| | | || |||| || |||| | | || || | ||||
Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCG---GTCCTTG 177
Query 1482 --CGTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCT 1539
||||||||||||| || || | ||||||||||||| ||||||| ||| ||||||
Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237
Query 1540 TCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATC 1599
|| |||| |||| | |||||||| ||| |||||| || ||||||||||||| |
Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297
Query 1600 TTCGTTTCGAGCCGCTGTTGCACGGTCGGCTCGACCGCGAATTT--CTTCGACACGTCGC 1657
|||||||| |||||||| || ||| |||| | || |||||| || || |||
Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGT--T 355
Query 1658 CCGTGTCGTTCAGCTTGGCGATTT 1681
| | ||||||| ||||||||||
Sbjct 356 CAACGCCGTTCAGTTTGGCGATTT 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114245333134470
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