Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_009236.1
Length=36690
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 389 9e-104
>seq1141
Length=3271
Score = 389 bits (430), Expect = 9e-104
Identities = 553/775 (71%), Gaps = 11/775 (1%)
Strand=Plus/Plus
Query 3186 GCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGC 3245
|||||| | ||||| |||||||||| ||| | |||||| || | ||| |||| |
Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAGAGA 2457
Query 3246 ACG----CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGA 3301
|| ||||| | ||||| || ||||||||||| |||||||| ||||| || ||
Sbjct 2458 GCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGA 2517
Query 3302 GGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGC 3361
||| || | || || | ||| | || ||||| || ||| ||||||| ||||||||
Sbjct 2518 GGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGC 2577
Query 3362 TCAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGCGGCGGCCGACATCGA 3421
||||| ||||| |||||||| ||||||| ||||||||| | || |||| | | ||
Sbjct 2578 GCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGA 2637
Query 3422 GCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAA 3481
||| | |||||| ||||| | ||||||| ||||||||||||||| ||||| || || ||
Sbjct 2638 GCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAA 2697
Query 3482 CGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCC 3541
||| |||||||||||| || ||||||||| |||| | ||||| ||||| ||| | |
Sbjct 2698 CGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCA 2757
Query 3542 GAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAA 3601
| |||| |||||| |||||| |||||||| ||||| || ||| | ||||| |
Sbjct 2758 GCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCA 2817
Query 3602 GACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGC 3661
|||||| ||| ||||| || ||| | | ||||| |||||| |||||||| |||||
Sbjct 2818 GACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGC 2877
Query 3662 GCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGC 3721
|| || ||||| || || || | ||||| | ||| |||||| ||
Sbjct 2878 GCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC---GC 2934
Query 3722 GCTCGTGC---GCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCT 3778
| | ||| |||| | ||||| ||||| |||||| ||||| || || |||
Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994
Query 3779 CGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAG 3838
|| || || || || |||||| ||||||||||| ||||| || |||| | ||||||||
Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054
Query 3839 CGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTT 3898
|| | ||| |||| ||| ||||| |||||| |||||||| || || || || ||
Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114
Query 3899 CAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3953
| ||||||| || ||| ||||||||||| ||||| | |||| ||||
Sbjct 3115 CCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGGGAGGAC 3169
Score = 188 bits (208), Expect = 2e-43
Identities = 274/384 (71%), Gaps = 10/384 (3%)
Strand=Plus/Plus
Query 1358 ATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCG 1417
|||||||||||||||||| || ||||| ||||||| |||||| ||||||||||
Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60
Query 1418 GCGAACTTCGCCCACATGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTC 1477
| ||||||||||||| ||| || | || | || ||||| ||| ||||| |
Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120
Query 1478 TCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTT- 1536
||||||||||| | | || |||| || |||| | | || || | ||||
Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCG---GTCCTTG 177
Query 1537 --CGTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCT 1594
||||||||||||| || || | ||||||||||||| ||||||| ||| ||||||
Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237
Query 1595 TCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATC 1654
|| |||| |||| | |||||||| ||| |||||| || ||||||||||||| |
Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297
Query 1655 TTCGTTTCGAGCCGCTGTTGCACGGTCGGCTCGACCGCGAATTT--CTTCGACACGTCGC 1712
|||||||| |||||||| || ||| |||| | || |||||| || || |||
Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGT--T 355
Query 1713 CCGTGTCGTTCAGCTTGGCGATTT 1736
| | ||||||| ||||||||||
Sbjct 356 CAACGCCGTTCAGTTTGGCGATTT 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117282019719480
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