Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1141 389 9e-104 >seq1141 Length=3271 Score = 389 bits (430), Expect = 9e-104 Identities = 553/775 (71%), Gaps = 11/775 (1%) Strand=Plus/Plus Query 3186 GCGTTCCGCGATTCGCTGTTCGACTATCAGAAAGTCTGGTATCGGAACGGCGATCAGCGC 3245 |||||| | ||||| |||||||||| ||| | |||||| || | ||| |||| | Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAGAGA 2457 Query 3246 ACG----CGCAACATCCTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGA 3301 || ||||| | ||||| || ||||||||||| |||||||| ||||| || || Sbjct 2458 GCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGA 2517 Query 3302 GGCGCTCGTCGACGCCCTCGACACCGACCGTAATCAAATCTTCCTGTCGGCGAGCAAGGC 3361 ||| || | || || | ||| | || ||||| || ||| ||||||| |||||||| Sbjct 2518 GGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGC 2577 Query 3362 TCAGGCGCACGTCTTCAAGCAGTACATCACGCAGTTCGCGCGCGCGGCGGCCGACATCGA 3421 ||||| ||||| |||||||| ||||||| ||||||||| | || |||| | | || Sbjct 2578 GCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGA 2637 Query 3422 GCTCACGGGCGATCCGATCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAA 3481 ||| | |||||| ||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct 2638 GCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAA 2697 Query 3482 CGCGCGCACCGCGCAGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCC 3541 ||| |||||||||||| || ||||||||| |||| | ||||| ||||| ||| | | Sbjct 2698 CGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCA 2757 Query 3542 GAAGTTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAA 3601 | |||| |||||| |||||| |||||||| ||||| || ||| | ||||| | Sbjct 2758 GCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCA 2817 Query 3602 GACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGC 3661 |||||| ||| ||||| || ||| | | ||||| |||||| |||||||| ||||| Sbjct 2818 GACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGC 2877 Query 3662 GCACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGC 3721 || || ||||| || || || | ||||| | ||| |||||| || Sbjct 2878 GCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC---GC 2934 Query 3722 GCTCGTGC---GCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCT 3778 | | ||| |||| | ||||| ||||| |||||| ||||| || || ||| Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994 Query 3779 CGATGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAG 3838 || || || || || |||||| ||||||||||| ||||| || |||| | |||||||| Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054 Query 3839 CGCCGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTT 3898 || | ||| |||| ||| ||||| |||||| |||||||| || || || || || Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114 Query 3899 CAAGCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGAC 3953 | ||||||| || ||| ||||||||||| ||||| | |||| |||| Sbjct 3115 CCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGGGAGGAC 3169 Score = 188 bits (208), Expect = 2e-43 Identities = 274/384 (71%), Gaps = 10/384 (3%) Strand=Plus/Plus Query 1358 ATGATGCGATCGAGCGCCCCCTGGTTGAGGATCACGTCGCGGATGCGCTGCTGGAAGTCG 1417 |||||||||||||||||| || ||||| ||||||| |||||| |||||||||| Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60 Query 1418 GCGAACTTCGCCCACATGTCGAGCTTGCGATACGGAATCGCCGTGTCGTAGTCGGTCTTC 1477 | ||||||||||||| ||| || | || | || ||||| ||| ||||| | Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120 Query 1478 TCGCAGCGGTAGCGGTTGCTGTCGAGCGCCGTCGGGTCGATCGGTTGGCGCGCGGCCTT- 1536 ||||||||||| | | || |||| || |||| | | || || | |||| Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCG---GTCCTTG 177 Query 1537 --CGTCGTGTCGGTGCGGCTCGCGATCGGGCCGGACACGGACAGGCCGAGCTTTTCGCCT 1594 ||||||||||||| || || | ||||||||||||| ||||||| ||| |||||| Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237 Query 1595 TCGAGCTCGGTCACGGGCAGCACGTTGATGCGCTTGAGAAACTCGCTCGATTCCTGCATC 1654 || |||| |||| | |||||||| ||| |||||| || ||||||||||||| | Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297 Query 1655 TTCGTTTCGAGCCGCTGTTGCACGGTCGGCTCGACCGCGAATTT--CTTCGACACGTCGC 1712 |||||||| |||||||| || ||| |||| | || |||||| || || ||| Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGT--T 355 Query 1713 CCGTGTCGTTCAGCTTGGCGATTT 1736 | | ||||||| |||||||||| Sbjct 356 CAACGCCGTTCAGTTTGGCGATTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117282019719480