Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1141 720 0.0 >seq1141 Length=3271 Score = 720 bits (798), Expect = 0.0 Identities = 664/835 (80%), Gaps = 4/835 (0%) Strand=Plus/Minus Query 4522 TTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCG-CGAACGGCCG 4580 || ||||||||||| ||||| ||| || || ||||| || || |||| | || ||| | Sbjct 3231 TTCGGGTCGTAGCCCACCCATACCTCACGATTACCGAAAGGGCGGGGCGACCAATGGC-G 3173 Query 4581 GAAGTCTTCCCATACCTCCCAACTGTCCACCATCCCGCGCATGAGCATCGCGAGCGGAAA 4640 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||| || Sbjct 3172 GAAGTCCTCCCACACCTCCCAGCTGTCGACCATGCCGCGCATGAGCATCGACAGCGGGAA 3113 Query 4641 CACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCT 4700 || || || |||| |||||||| ||||||| |||||||| |||| || ||||| Sbjct 3112 GACAGAGGCCGTGTCATCGATGAAGCCGCACATCAGCAGGTTCTCGAAGTCCGCATCGCT 3053 Query 4701 GTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTC 4760 ||||||||| |||| ||||||||||||||||||||||||||| ||| || || || || Sbjct 3052 GTACTCCAGCCGCAACTGGTCGAGGTCGAACAGGTTGCAGCCACCGGCGATGGCGTCTTC 2993 Query 4761 CACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCG-AAGCGCGG 4819 |||||| || || || |||||| ||||||||||| ||| |||||| | ||| || Sbjct 2992 CACCGTGACAATCTGTTTCCACTGACCGTCCGCGCACCGCCGGCCGTCCTGCAAGTTCG- 2934 Query 4820 CGTGGCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGC 4879 ||||||| | ||| | ||| || | ||||| | ||||| |||||||| |||| Sbjct 2933 CGTGGCTGACGTCAACGCGGATGTGGTCTTCCTTCTTCCGCCCGCGATTGAACAGCGCGC 2874 Query 4880 CGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGAC 4939 | ||||||||||| || || || || | | ||| || ||||| ||||| || ||||| | Sbjct 2873 CAGACCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCC 2814 Query 4940 GCCAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCA 4999 |||| | | |||||| ||||| |||||||| ||||||||||| || ||||||||| | | Sbjct 2813 GCCACTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGA 2754 Query 5000 CCCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCG 5059 ||||||||| || || | || |||||||||||||| |||||||||||| ||||| | Sbjct 2753 TCCAGAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTG 2694 Query 5060 TGCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCTCGA 5119 ||||||| || || ||||| |||||||| |||| ||||||||| |||||||||||||| | Sbjct 2693 TGCCGAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCA 2634 Query 5120 TCCCGGCCGCGTCCTTGGCGAACTGGATGATGTATTGCTTGAAGACGTGCGCCTGCGCCT 5179 ||||| || ||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2633 CGCCGGCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCT 2574 Query 5180 TGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCCTCGC 5239 |||||||||| | ||||||||| ||||| || ||||||| ||| || ||||| ||||| | Sbjct 2573 TGCTGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCC 2514 Query 5240 GTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGCTCGA 5299 ||||||| |||||||| || |||||||| |||||||| || | |||||||| ||||| Sbjct 2513 GTGCGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGCTCTC 2454 Query 5300 CCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGAAGGC 5354 | || || ||||||||| | |||||||| |||||||| || || | ||| || Sbjct 2453 TGAGACCCGCTTCGTACCAGGCACGCTGGTAGTCGAACATTGAATCCCTGAACGC 2399 Score = 459 bits (508), Expect = 7e-125 Identities = 449/574 (78%), Gaps = 10/574 (2%) Strand=Plus/Minus Query 6670 CGCTGAAGGCCCAGCTCGAGAAGACCGACACCTACGCCGTCCGCCCGCCGGCCACGGGTG 6729 |||| |||| | |||| ||||| ||||| || | | | | |||||||||||||| | Sbjct 565 CGCTAAAGGGCGAGCTGGAGAACACCGAGACGTTCACGAAGAGACCGCCGGCCACGGGCG 506 Query 6730 GCGACGGCGCCGGCGCACCCATCACGACCGATTGCTGACCCGGCCACCGGCCCGCAGCAC 6789 || ||||| || |||| |||| |||||| |||||| ||||| |||| | || | | Sbjct 505 GCAGCGGCGACGCCGCA---ATCAAGACCGACTGCTGAGCCGGCACCCGGACAGCGACTC 449 Query 6790 ACCAACCAGACCACACACCGGAGTCAACACAATGCGCAACGATACCCGCCGCCTCTTCGC 6849 |||| || || |||||| |||| | ||||| |||||||||||||| | | | | Sbjct 448 CATAACC----CATAC-CCGGAGCCAACTCTATGCGTAACGATACCCGCCGGATGTACAC 394 Query 6850 GGCGTAC-AAGGCTGCAATCGCCAAGCTGAACGGCGTGGAGCGCGTCGACGAGAAGTTCA 6908 ||||||| ||||| | ||||||||| ||||||||||| || ||||| ||| || |||| Sbjct 393 GGCGTACGAAGGC-GAAATCGCCAAACTGAACGGCGTTGAACGCGTTGACCGCAAATTCA 335 Query 6909 GCGTCGCGCCGAGCGTCCAGCAGAAGCTGGAGACCAAGGTTCAGGAGTCGAGCGACTTCC 6968 |||| ||||||||||||||| |||||| || ||||| ||||| ||||| || || | Sbjct 334 GCGTGCAACCGAGCGTCCAGCAGCGGCTGGAAACGAAGGTGCAGGAATCGAGTGAATTTC 275 Query 6969 TGAAAAGCATCAACTTCTACGGCGTGCCCGAACAGGAAGGCGAAAAGATCGGCCTGGGCG 7028 | | |||||| | | ||||||| || ||||||||||| ||||||||||| |||| Sbjct 274 TCCAGCAGATCAACGTTCATGGCGTGCTGGAGCAGGAAGGCGAGAAGATCGGCCTCGGCG 215 Query 7029 TGTCCGGCCCGGTGGCAAGCACCACCGACACCACCCAGCAGGACCGGGAGACCTCCGACA 7088 |||||||||||||||| ||||||||||||| || |||||||| ||||| ||||| Sbjct 214 TGTCCGGCCCGGTGGCCGGCACCACCGACACGACGGTCAAGGACCGGCAGACCAGCGACA 155 Query 7089 TTTCGACGATGGACGGTCGCCGTTATCGTTGCGAGCAGACCAACTCGGACACGCACATCA 7148 || ||||| |||| |||||| || || ||||||||||||||||||||||| ||||||| Sbjct 154 TTGCGACGCTGGATGGTCGCAAGTACCGCTGCGAGCAGACCAACTCGGACACCCACATCA 95 Query 7149 CCTACCAGAAGCTGGACGCTTGGGCGAAGTTCGCCGACTTCCAGACTCGCATCCGCGACG 7208 |||||||| || ||||| |||||||||||| ||||||||||||| ||||| ||||||| Sbjct 94 CCTACCAGCGCCTTGACGCGTGGGCGAAGTTCCCCGACTTCCAGACGCGCATTCGCGACG 35 Query 7209 CCATCATCAAGCGCCAGGCGCTGGACCGCATCAT 7242 ||||| | ||||||||||| || |||||||| Sbjct 34 CCATCCTGCGCCGCCAGGCGCTCGATCGCATCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123905772333780