Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq1141 93.3 9e-15 >seq1141 Length=3271 Score = 93.3 bits (102), Expect = 9e-15 Identities = 270/413 (65%), Gaps = 2/413 (0%) Strand=Plus/Minus Query 13905 CCAGAACCGGTACGCCTCGTGCACCTTGCTCGACGGGGTCGAGAAGTAGGTCTTGCGCCA 13964 ||||||| ||||||| ||||| | |||||| || |||||||| || |||| ||||| Sbjct 2869 CCAGAACGGGTACGCTTCGTGGGCAAGGCTCGAAGGCGTCGAGAAATAAGTCTGCCGCCA 2810 Query 13965 GTGGCTCTGGGTCGCCATGGCACTGGCCACATCAGACAGCTTCTCGAAGTTGGGGATCCA 14024 | ||| | ||||| | |||||| | ||||| | |||| ||||||| Sbjct 2809 CTTCGAGTGGATGGCCATCCCGGAGGCCACCTTGCGCAGCTCTTGGAAGCGCTGGATCCA 2750 Query 14025 GAAGTATTCGTCGATGTAGACGTTGCCGGAGCGGGACTGGGCACTGTTGGAGTTGGTGGA 14084 |||||| ||||| | |||| ||||||| | ||| || || | ||| ||| Sbjct 2749 GAAGTACTCGTCCAGATAGAGGTTGCCGTGATAGCTCTGCGCGGTGCGTGCGTTTGTGCC 2690 Query 14085 GCAGAAGTGCAGCTCGGCCCCGTTCGACAGCACGATGGGGTTGCCGGTCAGGGTGACGCC 14144 | ||| | |||| || ||||||| || ||| || || | ||| |||| ||||| Sbjct 2689 GAGGAAATACAGCGTCGCGCCGTTCGGCAACACCATCGGCTCGCCCTTCAGCTCCACGCC 2630 Query 14145 GAGGAAGGT-CTGGGCGATCTTGCAGATATAGGAGCGGAACACCTCCGCCTGGGCGCGGG 14203 | | | | || |||| || | ||| || ||| || | ||||| || | Sbjct 2629 G-GCAGCATCCTTCGCGAACTGGATGATGTATTGCTTGAAAACGTGGGCCTGCGCCTTGC 2571 Query 14204 TGGCGGACAGGAAAATCTGGTTGCCACCCGTCAGAATGGCATCCTCCAACGCCTCGCCGG 14263 |||| |||| ||||||||| |||| ||||| | ||||| || ||||| | | Sbjct 2570 TGGCCGACAAGAAAATCTGATTGCGCCCCGTGGTCAACGCATCAATGAAGGCCTCCCGTG 2511 Query 14264 CGAAATAGTAAGTCATCCCGATCTGACGGGACTTGAGAATGTTACGGGTGCGC 14316 ||||||| | || |||||||| ||| ||| |||| || ||| | ||| Sbjct 2510 CGAAATACCACGTGGCACCGATCTGGCGGCTCTTCAGAACATTGCGGATACGC 2458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108626342994030