Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 143 6e-29 seq7 125 2e-23 seq11 107 5e-18 seq8 104 6e-17 seq10 100 7e-16 seq4 84.2 5e-11 seq3 84.2 5e-11 >seq1 Length=98543444 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || || || || || || ||||| ||||| | || ||||| ||||||| Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 87380331 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || ||| || ||||| || || || || || ||||| || || | Sbjct 87380330 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 87380271 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||||||||||| ||||| ||||||||||||||||| || ||||| || |||| Sbjct 87380270 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 87380211 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 87380210 AGATCTGCATTTTG 87380197 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| || || ||||| || |||||||| Sbjct 57604334 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 57604275 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| ||||| |||| |||||| || |||||| Sbjct 57604274 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGG---TCTGGG 57604218 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || |||||||| || |||||||| || || || | ||| || || Sbjct 57604217 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCA 57604158 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || ||||| |||||||| Sbjct 57604157 ACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 57604108 >seq7 Length=68045021 Score = 125 bits (138), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || || ||||| || ||||| || Sbjct 66406571 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 66406512 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| || || |||||||| ||||||| | ||| || |||||| Sbjct 66406511 AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGG---TCTGGG 66406455 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| ||||||||||| || || || ||||| || || | || ||| | Sbjct 66406454 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCT---T 66406398 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || |||||||| ||||| |||||||| Sbjct 66406397 TCGACCTCAAGGGTAATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || || || ||||| || ||||| || Sbjct 66406799 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 66406740 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||| | ||| || |||||| Sbjct 66406739 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGG---TCTGGG 66406683 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || |||||||| || || | ||| ||| Sbjct 66406682 GGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCC 66406623 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 66406622 ACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 66406573 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || || ||||| || || || || Sbjct 66406343 CCACCACGTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT 66406284 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || || || ||||| |||||||| || | || ||| || ||| Sbjct 66406283 AGAGTACGTCCGTCCTCCAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGA---TCCGGG 66406227 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||||||||| || || || ||||| || || | ||| ||| Sbjct 66406226 GGAATTCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCC 66406167 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| ||||| || || || |||||||| Sbjct 66406166 ACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || |||||||| ||||| || Sbjct 66407483 CCACCACGGAGACGGAGGACAAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 66407424 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| |||| | ||| || |||| Sbjct 66407423 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGG 66407364 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || || ||||| || || |||||||| || || || | || ||| || Sbjct 66407363 ATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTC---TCC 66407307 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | ||||| ||||||||||||| ||||| || || ||||||||| Sbjct 66407306 ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTCACAAAGATCTGCATT 66407256 >seq11 Length=56302525 Score = 107 bits (118), Expect = 5e-18 Identities = 174/245 (71%), Gaps = 14/245 (6%) Strand=Plus/Plus Query 288235 ATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATA 288294 ||||| | | |||||| ||||| || || |||||||||| || ||||| |||||| Sbjct 486350 ATTCAGAAGTTTCCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCTTTGTGGATA 486409 Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| || || |||| || || || | || || || || ||||| || | | || Sbjct 486410 TTGTAGTCTGCAAGGATGCGACCATCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCCGT 486469 Query 288355 TGAGAATCTGG--GATTCCTT-CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 ||| ||||| || ||||| | || ||||| || | |||||||| | | ||| | Sbjct 486470 TGA---TCTGGTGGAATCCTTTCCTTGTCCTGTATCCTTGCTTTCACAGT--CAGTAGTA 486524 Query 288412 TC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 || |||| | || || | ||||| |||||||| ||||||||||| || || ||| Sbjct 486525 TCTGAGCTC---TTAACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATC 486581 Query 288469 TGCAT 288473 ||||| Sbjct 486582 TGCAT 486586 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||||||||||| || || || || Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| | ||||| || || |||||||| | ||| || |||| Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTG---ATCTGGA 496443 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || ||||| || || || || || ||||| || || || || | || ||| Sbjct 496442 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTC--- 496386 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || ||||| || ||||||||||| Sbjct 496385 TCAACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || |||||||| || || || || Sbjct 496787 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 496728 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || |||||||| | ||| || |||||| Sbjct 496727 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 496671 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || || ||||| ||||| || || || || | || |||| Sbjct 496670 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTC--- 496614 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| ||||||||||| || || || || ||||| Sbjct 496613 TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 496561 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| || |||||||| || || || | Sbjct 487285 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGTA 487344 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||| || || |||||||| | ||| || |||||| Sbjct 487345 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGG---TCTGGG 487401 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || ||||| || || | ||||| ||||| || || || || | || |||| Sbjct 487402 GAAATACCTTCCTTGTCTTCAATTTTAGCTTTGACATTATCAATGGTGTCTGAGCTC--- 487458 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || || || || ||||| ||||||||||| Sbjct 487459 TCAACCTCAAGAGTTATAGTCTTTCCGGTCAGAGT 487493 >seq8 Length=65866657 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||| || || ||||| || || || || | |||||| ||||| ||||| Sbjct 2962325 CCTTCCTTGTCCTGTATCTTAGCTTTAACATTATCGATGGTATCGCTGGATTCAACTTCC 2962266 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || ||||||||||| || ||||||||||||||| Sbjct 2962265 AGCGTTATCGTTTTACCGGTCAGAGTTTTCACGAATATCTGCATT 2962221 >seq10 Length=65527505 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || || || || |||||||| | || |||||||| ||| Sbjct 1072529 TCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAAG 1072588 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| || ||||| || |||||||| || ||||| || Sbjct 1072589 ATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACA 1072645 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || || ||||| ||||| || || || || Sbjct 1072646 TTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTT 1072702 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 1072703 TTAACAAATATCTGCAT 1072719 >seq4 Length=66470942 Score = 84.2 bits (92), Expect = 5e-11 Identities = 156/225 (69%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | |||||| | || ||||| | || || ||| ||||| | ||||| || | Sbjct 46321629 CACCACAAAGTCTA-GCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCA 46321571 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG-- 288365 ||||| || || || | || || || || || ||||| | || || ||||| Sbjct 46321570 AGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGG---TCTGGAG 46321514 Query 288366 -GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||||||||||| || || || || || || | || || |||| || ||| |||| | Sbjct 46321513 GGATTCCTTCTTTGTCTTGTATCTTGGCCTTAGCATTGTCGATAGTATTGCTGAATTCGA 46321454 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 |||| || || || || || | ||| ||||| || |||||||||| Sbjct 46321453 CTTCCAGAGTAATGGTTTTACTGGT-AGAGTTTTCACGAATATCT 46321410 >seq3 Length=70787664 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761 || |||||||| | ||| ||| || ||||||||||||||| |||||||||| ||||| Sbjct 67188059 AGGGATTGGGGTTTTGCTGGGGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAG 67188118 Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787 | |||||||| |||||| | ||||| Sbjct 67188119 AAGCCGGATGATTATGTGGTAGCAAC 67188144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179606865457310