Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 7e-12 >seq2 Length=55340444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/290 (67%), Gaps = 14/290 (5%) Strand=Plus/Plus Query 8629 CGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTA 8688 |||| |||||| | | ||||||||| ||| | || || | || |||||| || | Sbjct 47380516 CGGCGCATTGGTACACGGTGAATTACCGGGAAGCGTACGGGATATTCGCGTGCAATGGGA 47380575 Query 8689 TTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC- 8747 ||||||||||||||||||| || ||||| || | |||||||||| | |||||| ||| Sbjct 47380576 TTCTCTTCAACCACGAGTCTCCACGTCGGGGTGAGAATTTCGTGACGAGGAAGATTACCC 47380635 Query 8748 -----GATGGTATCAAACAAATCGTCGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAAC 8801 | || | | | |||||| || | |||| || | || ||||| || Sbjct 47380636 GGGCTGTAGGGAGGATAAAAATCG----GGCTACAGAGCAAGGTTTTT---TTGGGTAAT 47380688 Query 8802 CTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTA 8861 | | || ||||||||||| || |||||||| ||||| |||||| | | Sbjct 47380689 TTACAGGCGTCAAGGGACTGGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATG 47380748 Query 8862 CTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACA 8911 || || ||||| | | ||||| || || || || |||| ||| |||| Sbjct 47380749 CTGCAGCAAGAGAAACCAGACGACTACGTTGTGGCAACGGAGGATTCACA 47380798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330116536600