Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 8e-24
seq12 107 2e-18
seq7 98.7 1e-15
seq11 95.1 1e-14
seq10 89.7 6e-13
seq3 82.4 8e-11
>seq1
Length=98543444
Score = 125 bits (138), Expect = 8e-24
Identities = 147/195 (75%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| ||||||||||| ||||| || | || || |||||||| || |||||
Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | |||||||||||| | ||| | | ||||||| | ||| | || | ||||| |
Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 87380273
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||||||||||| || || | |||||| || || ||||| || || || ||
Sbjct 87380272 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 87380213
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||||||
Sbjct 87380212 GAAGATCTGCATTTT 87380198
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || |
Sbjct 57604323 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 57604264
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 57604263 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 57604204
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||| | | | | |||||| || || || || | |||||
Sbjct 57604203 GTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 57604144
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212
|| || |||||||| || || || ||||| ||||| |||
Sbjct 57604143 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 57604104
>seq12
Length=67145203
Score = 107 bits (118), Expect = 2e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| ||||| || || || | || || ||||||||||| |||||
Sbjct 66287176 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 66287235
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | |||||||||||| | ||| | || ||||||| | ||| | || | | | | |
Sbjct 66287236 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 66287294
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || || | || ||||| |||||||| || ||||| |
Sbjct 66287295 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCA 66287354
Query 42196 CAAAGATTTGCATTTT 42211
||||||| ||||||||
Sbjct 66287355 CAAAGATCTGCATTTT 66287370
Score = 93.3 bits (102), Expect = 5e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| ||||| || || || | || || |||||||| || |||||
Sbjct 66338166 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 66338107
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | | ||||||||| | ||| | || ||||||||| ||| | || | | | | |
Sbjct 66338106 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 66338048
Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| || | | || || || || || | || || || ||||||||||| ||||| ||
Sbjct 66338047 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 66337988
Query 42197 AAAGATTTGCATTTT 42211
|||||| ||||||||
Sbjct 66337987 AAAGATCTGCATTTT 66337973
>seq7
Length=68045021
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/208 (72%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||| ||| |||||| || |||||||| ||||| || || || | || || ||||||
Sbjct 66407459 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 66407400
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
||||||||||| || | | ||||||||| | ||| | | |||||||||| ||| | ||
Sbjct 66407399 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTT 66407341
Query 42126 TG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181
| ||| | | | | ||||| ||| ||||| || | |||||||| || ||
Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCC 66407284
Query 42182 CGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | ||||| |||||||| ||||||
Sbjct 66407283 GGTCAAGGTCTTCACAAAGATCTGCATT 66407256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| || ||||||||| || || || || |||| ||| || | || ||
Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || || | | ||||||||| | || | | |||||||||
Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 66407119
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGT 42175
||| || |||| | | | |||||| ||| || || || | ||||||||
Sbjct 66407118 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 66407062
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || ||||| ||||||||||||||
Sbjct 66407061 TTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||||||||||||
Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | | ||||||||| | || | | |||||||||| ||| || || | |
Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| |||||| || | |||||||| || || || || ||||| ||
Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 66406812 AAAAATCTGCAT 66406801
>seq11
Length=56302525
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | |||| || || || |||||||| || || | ||||| ||||| | ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130
| | |||||||| | ||| | |||| ||
Sbjct 497351 ATACCCTCCTTGT-CTTGAATCTTTGCTT 497324
Score = 93.3 bits (102), Expect = 5e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
||||||| | | || || || || |||||||| || || | ||||| ||||| | ||
Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 42159
| | |||||||| | ||| | |||| || | | | || | || || | || |
Sbjct 497579 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 497522
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| || ||||||||||| || || || | || || ||||| || ||||| ||
Sbjct 496752 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 496693
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || | ||||||||| | || | | ||||||| | ||| |||| | |||||
Sbjct 496692 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 496634
Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192
| | | ||||| |||| || || || | || || || || || || || || |
Sbjct 496633 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 496577
Query 42193 TTACAAAGATTTGCAT 42208
| ||||||||||||||
Sbjct 496576 TAACAAAGATTTGCAT 496561
>seq10
Length=65527505
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| |||| | ||||| ||||| || | || |||||| || || |||||||||||
Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || |||| || || ||||| || || || || | | ||||||||| | |||
Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160
| | || |||||| ||| |||| | | | | | | | | ||||| ||||||
Sbjct 1071929 ATACCTTCTTTGTCC-TGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 1071987
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||| || ||||| || | ||||| ||||||||||||||
Sbjct 1071988 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | || ||| || ||||| ||||||||||| ||||| || |
Sbjct 1072504 ACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACC 1072563
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || || || || || | ||||||||| | || | || |||||
Sbjct 1072564 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 1072623
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|||| ||| || ||| | | | | ||||| ||| |||||| || | ||
Sbjct 1072624 GTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 1072680
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || || || || || ||||| || |||||
Sbjct 1072681 GATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719
>seq3
Length=70787664
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080
||||||||||| ||||| ||||| || ||| | || || ||||| |||||||| || ||
Sbjct 52499886 TTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGATC 52499945
Query 42081 AGTCGCTGCTGGTCGGCTGG 42100
|||||||||||||| | |||
Sbjct 52499946 AGTCGCTGCTGGTCCGGTGG 52499965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543191444946800
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