Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq12 107 2e-18 seq7 98.7 1e-15 seq11 95.1 1e-14 seq10 89.7 6e-13 seq3 82.4 8e-11 >seq1 Length=98543444 Score = 125 bits (138), Expect = 8e-24 Identities = 147/195 (75%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | |||||||||||| | ||| | | ||||||| | ||| | || | ||||| | Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 87380273 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||||||||||| || || | |||||| || || ||||| || || || || Sbjct 87380272 GTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 87380213 Query 42197 AAAGATTTGCATTTT 42211 ||||| |||||||| Sbjct 87380212 GAAGATCTGCATTTT 87380198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 57604323 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 57604264 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 57604263 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 57604204 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || ||| | | | | |||||| || || || || | ||||| Sbjct 57604203 GTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 57604144 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || |||||||| || || || ||||| ||||| ||| Sbjct 57604143 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 57604104 >seq12 Length=67145203 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 66287176 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 66287235 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||||||| | ||| | || ||||||| | ||| | || | | | | | Sbjct 66287236 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 66287294 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || || | || ||||| |||||||| || ||||| | Sbjct 66287295 TGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCA 66287354 Query 42196 CAAAGATTTGCATTTT 42211 ||||||| |||||||| Sbjct 66287355 CAAAGATCTGCATTTT 66287370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 66338166 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCCGCGAAA 66338107 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | ||||||||| | ||| | || ||||||||| ||| | || | | | | | Sbjct 66338106 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 66338048 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | | || || || || || | || || || ||||||||||| ||||| || Sbjct 66338047 GTCAATGGTATCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 66337988 Query 42197 AAAGATTTGCATTTT 42211 |||||| |||||||| Sbjct 66337987 AAAGATCTGCATTTT 66337973 >seq7 Length=68045021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || |||||||| ||||| || || || | || || |||||| Sbjct 66407459 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 66407400 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| || | | ||||||||| | ||| | | |||||||||| ||| | || Sbjct 66407399 TTACCAGCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTT 66407341 Query 42126 TG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181 | ||| | | | | ||||| ||| ||||| || | |||||||| || || Sbjct 66407340 AGCTTTCACATTGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCC 66407284 Query 42182 CGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| |||||||| |||||| Sbjct 66407283 GGTCAAGGTCTTCACAAAGATCTGCATT 66407256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| || ||||||||| || || || || |||| ||| || | || || Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || || | | ||||||||| | || | | ||||||||| Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 66407119 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGT 42175 ||| || |||| | | | |||||| ||| || || || | |||||||| Sbjct 66407118 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 66407062 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || ||||| |||||||||||||| Sbjct 66407061 TTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||||||||||||||| Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| |||||| || | |||||||| || || || || ||||| || Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 66406812 AAAAATCTGCAT 66406801 >seq11 Length=56302525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | |||| || || || |||||||| || || | ||||| ||||| | || Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 | | |||||||| | ||| | |||| || Sbjct 497351 ATACCCTCCTTGT-CTTGAATCTTTGCTT 497324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | | || || || || |||||||| || || | ||||| ||||| | || Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 42159 | | |||||||| | ||| | |||| || | | | || | || || | || | Sbjct 497579 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 497522 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||||||||| || || || | || || ||||| || ||||| || Sbjct 496752 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 496693 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | ||||||||| | || | | ||||||| | ||| |||| | ||||| Sbjct 496692 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 496634 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | || || || || || || || || | Sbjct 496633 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTT 496577 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 496576 TAACAAAGATTTGCAT 496561 >seq10 Length=65527505 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||||| ||||| || | || |||||| || || ||||||||||| Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || || ||||| || || || || | | ||||||||| | ||| Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| |||| | | | | | | | | ||||| |||||| Sbjct 1071929 ATACCTTCTTTGTCC-TGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 1071987 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || ||||| || | ||||| |||||||||||||| Sbjct 1071988 CTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||| || ||||| ||||||||||| ||||| || | Sbjct 1072504 ACGGAGCACCAAGTGGAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACC 1072563 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || | ||||||||| | || | || ||||| Sbjct 1072564 GTCTTCAAGCTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 1072623 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| ||| || ||| | | | | ||||| ||| |||||| || | || Sbjct 1072624 GTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGT 1072680 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || || || ||||| || ||||| Sbjct 1072681 GATAGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 1072719 >seq3 Length=70787664 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 42021 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 42080 ||||||||||| ||||| ||||| || ||| | || || ||||| |||||||| || || Sbjct 52499886 TTTTGAATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGATC 52499945 Query 42081 AGTCGCTGCTGGTCGGCTGG 42100 |||||||||||||| | ||| Sbjct 52499946 AGTCGCTGCTGGTCCGGTGG 52499965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543191444946800