Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 131 2e-25 seq10 105 7e-18 seq1 102 8e-17 seq12 91.5 1e-13 >seq11 Length=56302525 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || | ||| | |||||||||| || ||||||||||| Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| ||||||||||| | | |||| | |||||||||||| || || Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 497351 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 497294 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||||| ||| || |||||||| |||||| Sbjct 497293 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || | ||| | |||||||||| || ||||||||||| Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | ||||| ||||||||||| | | |||| | |||||||||||| || || Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| | Sbjct 497579 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 497522 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| ||| || ||||| |||||||| Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || || || || ||||| || | | Sbjct 496754 GACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCA 496695 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || |||||||| ||||| ||| |||| | ||| | Sbjct 496694 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTGAC 496636 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | || || || ||||||||||| Sbjct 496635 ATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTT 496576 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 496575 AACAAAGATTTGCAT 496561 >seq10 Length=65527505 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| || || || | | |||||||||| || |||||||| || Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| ||||| || |||| | |||| | | ||| ||||| || || Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||| |||| || | |||||| | |||| Sbjct 1071929 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCCA 1071986 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || ||||| || ||||| Sbjct 1071987 CCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | || || ||||| || || | | Sbjct 1071386 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCA 1071445 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || | ||| |||||||| || || || || ||||| ||| |||| | || Sbjct 1071446 AAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTAGCCTTCAC 1071504 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||||||| | || | ||||| ||||||| || | Sbjct 1071505 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCT 1071563 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 1071564 TCACAAAAATCTGCAT 1071579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||| || ||||||||||| || ||| | |||||| ||| || || || || || Sbjct 1072524 TTGACTCTTTCTGAATGTTGTAATCAGCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCT 1072582 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | | |||| || | ||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 1072583 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTA 1072642 Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| || | |||||| | |||||||| | || | || || ||||| || || Sbjct 1072643 ACATTG-TCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGT 1072701 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| ||||| |||||||| Sbjct 1072702 TTTAACAAATATCTGCAT 1072719 >seq1 Length=98543444 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | |||||| ||||| || || || |||| Sbjct 57604301 GACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCG 57604242 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | |||||| ||||| || || || ||||| ||||| ||| || ||| | | Sbjct 57604241 AAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACA 57604182 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||| ||||| | || | ||| || || || || ||||| Sbjct 57604181 TTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 57604123 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 57604122 CACGAAGATCTGCAT 57604108 Score = 100 bits (110), Expect = 3e-16 Identities = 143/194 (74%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| ||||||||||| || ||| | |||||| || ||||| || || |||| | Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 87380333 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540 ||| | ||||| |||||||| || |||||||| ||||| ||| | || | ||| || Sbjct 87380332 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 87380274 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| |||| || || || | ||| | ||| || || || |||||||| Sbjct 87380273 TG-TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTC 87380215 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 87380214 ACGAAGATCTGCAT 87380201 >seq12 Length=67145203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||||| Sbjct 66287174 GACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACCGGC 66287232 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| ||||| || || || ||||| ||||| ||| | || | ||| Sbjct 66287233 GAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 66287291 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 66287292 CATTG-TCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 66287350 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 66287351 TTCACAAAGATCTGCAT 66287367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496242890684400