Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq11 131 2e-25
seq10 105 7e-18
seq1 102 8e-17
seq12 91.5 1e-13
>seq11
Length=56302525
Score = 131 bits (144), Expect = 2e-25
Identities = 169/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||||||||| || | ||| | |||||||||| || |||||||||||
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | | |||||| ||||||||||| | | |||| | |||||||||||| || ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| |
Sbjct 497351 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 497294
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | || || ||||||| ||| || |||||||| ||||||
Sbjct 497293 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244
Score = 123 bits (136), Expect = 2e-23
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||||||||| || | ||| | |||||||||| || |||||||||||
Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | | ||||| ||||||||||| | | |||| | |||||||||||| || ||
Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| | |||| ||| |||| || | ||| || | ||| |
Sbjct 497579 ATACCCTCCTTGTC-TTGAATCTTTGCTTTCACATTG-TCAATGGTATCTGAACTCTCAA 497522
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| ||| || ||||| ||||||||
Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||| || | || || || || || ||||| || | |
Sbjct 496754 GACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCA 496695
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| || || |||||||| ||||| ||| |||| | ||| |
Sbjct 496694 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTGAC 496636
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | |||||| | ||| ||||| | || | || || || |||||||||||
Sbjct 496635 ATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTT 496576
Query 138600 TACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 496575 AACAAAGATTTGCAT 496561
>seq10
Length=65527505
Score = 105 bits (116), Expect = 7e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | ||||| || || || | | |||||||||| || |||||||| ||
Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| |||||| ||||| || |||| | |||| | | ||| ||||| || ||
Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|||||||||||||| ||| |||| | ||| |||| || | |||||| | ||||
Sbjct 1071929 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCCA 1071986
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| || || ||||| || |||||
Sbjct 1071987 CCTCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||||||||||| || ||| | || || ||||| || || | |
Sbjct 1071386 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCTGCA 1071445
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538
|||| || | ||| |||||||| || || || || ||||| ||| |||| | ||
Sbjct 1071446 AAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATTTTAGCCTTCAC 1071504
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||| || | ||||||||| | || | ||||| ||||||| || |
Sbjct 1071505 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTCT 1071563
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 1071564 TCACAAAAATCTGCAT 1071579
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477
||||||| || ||||||||||| || ||| | |||||| ||| || || || || ||
Sbjct 1072524 TTGACTCTTTCTGAATGTTGTAATCAGCT-AGAGTACGACCGTCTTCAAGCTGCTTTCCT 1072582
Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537
| | |||| || | ||| ||||| || || || ||||| ||||| ||| || |||
Sbjct 1072583 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTA 1072642
Query 138538 A-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| |||| || | |||||| | |||||||| | || | || || ||||| || ||
Sbjct 1072643 ACATTG-TCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGT 1072701
Query 138597 TTTTACAAAAATCTGCAT 138614
||| ||||| ||||||||
Sbjct 1072702 TTTAACAAATATCTGCAT 1072719
>seq1
Length=98543444
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | |||||| ||||| || || || ||||
Sbjct 57604301 GACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCG 57604242
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || | |||||| ||||| || || || ||||| ||||| ||| || ||| | |
Sbjct 57604241 AAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCACA 57604182
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||| ||||| | || | ||| || || || || |||||
Sbjct 57604181 TTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 57604123
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 57604122 CACGAAGATCTGCAT 57604108
Score = 100 bits (110), Expect = 3e-16
Identities = 143/194 (74%), Gaps = 7/194 (4%)
Strand=Plus/Minus
Query 138425 CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
||||| ||||||||||| || ||| | |||||| || ||||| || || |||| |
Sbjct 87380391 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 87380333
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540
||| | ||||| |||||||| || |||||||| ||||| ||| | || | ||| ||
Sbjct 87380332 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 87380274
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||| |||| || || || | ||| | ||| || || || ||||||||
Sbjct 87380273 TG-TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTC 87380215
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 87380214 ACGAAGATCTGCAT 87380201
>seq12
Length=67145203
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
|||||||| || ||||||||||| ||| | || || |||||||| || |||||||
Sbjct 66287174 GACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTGCTTACCGGC 66287232
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538
| || | ||||| ||||| || || || ||||| ||||| ||| | || | |||
Sbjct 66287233 GAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 66287291
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | |||||| | ||||| ||||| | || | || || || ||||| ||
Sbjct 66287292 CATTG-TCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 66287350
Query 138598 TTTACAAAAATCTGCAT 138614
|| ||||| ||||||||
Sbjct 66287351 TTCACAAAGATCTGCAT 66287367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496242890684400
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