Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq11 125 5e-24 seq1 95.1 9e-15 seq12 89.7 4e-13 seq10 89.7 4e-13 seq7 84.2 2e-11 >seq11 Length=56302525 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || || | ||| || || || || || || |||||||| || Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| |||| || | |||||| ||||| | ||||||||||||||||| ||| Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| |||||||| ||| | || || ||||| | | || || Sbjct 497351 ATACCCTCCTTGTCTTGAATCTTTGCTTTC-ACATTGTCAATGGTATCTGAACTCTCAAC 497293 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 497292 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 497245 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || || | ||| || || || || || || |||||||| || Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||| | || || | |||||| ||||| | ||||||||||||||||| ||| Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || |||||||| ||| ||||| ||| ||| | || || ||||| | | || || Sbjct 497579 ATACCCTCCTTGTCTTGAATCTTTGC-TTTCACATTGTCAATGGTATCTGAACTCTCAAC 497521 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||| ||| || ||||| || ||||| Sbjct 497520 CTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 496763 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 496704 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||| Sbjct 496703 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 496644 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 496643 GCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 496584 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 496583 AGAGTTTTAACAAAGATTTGCAT 496561 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | | ||| | || ||||| || ||||| || |||||||||| | Sbjct 497245 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAAT--C 497188 Query 15008 TGAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || | || | || || | ||| || ||||| | ||||| | ||| ||||| Sbjct 497187 TGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGG 497128 Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||| || |||||||| || ||||| ||| ||| | || |||||||| | | | Sbjct 497127 AGGAATACCCTCCTTGTCTTGTATCTTTGC-TTTAACATTGTCGATAGTATCTGAACTCT 497069 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 497068 CAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCAT 497017 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||||||| |||||||| ||||||||||| || ||| | ||||| | || Sbjct 496536 ATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 496477 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||| | ||| || || ||||| ||||||||||| ||| || Sbjct 496476 TTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 496417 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || | | || || || | || ||||| || || || Sbjct 496416 AGCTTTGACATTATCAATGGTGTCAGAACTCTCAACCTCAAGAGTGATGGTCTTTCCGGT 496357 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || || || ||||| || ||| || ||||||| ||| Sbjct 496356 GAGTGTCTTAACAAATATCTGC--ATCTGAAATATATT 496321 >seq1 Length=98543444 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 |||| || ||||||||||| ||| ||| | | | ||||| | || || || ||| | Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 87380332 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||| ||||| |||||| ||||||||||| ||| || ||| ||| | Sbjct 87380331 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 87380272 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||||| ||| || || | || || || || || || |||||||| || Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212 Query 15166 AAAATTTGCATATT 15179 || || ||||| || Sbjct 87380211 AAGATCTGCATTTT 87380198 >seq12 Length=67145203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 66287165 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTG 66287223 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| || Sbjct 66287224 CTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 66287283 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || || || ||||| || ||||||||||| || || || Sbjct 66287284 AGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGT 66287343 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 ||| || || ||||| || ||||| ||| Sbjct 66287344 CAGGGTCTTCACAAAGATCTGCATTTTT 66287371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 66338178 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCAAGCTG 66338120 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| | ||| ||||| |||||| ||||||||||| ||| || Sbjct 66338119 CTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTT 66338060 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTT-TCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| | || || ||||| | || ||||| ||||||||||| || || || | Sbjct 66338059 AGCCTTAACATTGTCAATGGTATC-CGATGACTCTACCTCTAAGGTAATAGTCTTGCCCG 66338001 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || || ||||| || ||||| ||| Sbjct 66338000 TTAGGGTCTTCACAAAGATCTGCATTTTT 66337972 >seq10 Length=65527505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | || || |||||||| || || || || ||||||||||| Sbjct 1071809 CCACCTCGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 1071868 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | ||| || || || | ||||| | ||| ||||| |||| Sbjct 1071869 AGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 1071928 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||||| || ||| | || || || || | |||| || Sbjct 1071929 ATACCTTCTTTGTCCTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACC 1071988 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || || || || |||| || || ||||| |||||||| Sbjct 1071989 TCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1072035 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 1072055 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1072114 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| | || ||||| ||||| ||||||||||| Sbjct 1072115 AGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 1072174 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || ||| |||| || || | ||| ||||| || Sbjct 1072175 ATCTTAGCCTTAACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1072234 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || |||||||||||||| Sbjct 1072235 CCAGTCAAAGTCTTCACAAAAATTTGCAT 1072263 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | || |||| || Sbjct 1072283 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCA 1072342 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| || | ||||| | || ||||| ||||| ||||||||||| Sbjct 1072343 AGCTGCTTGCCCGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 1072402 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || || |||| || || | ||| ||||| || Sbjct 1072403 ATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTT 1072462 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||||| || ||||||||||| Sbjct 1072463 CCTGTCAAAGTTTTCACGAAAATTTGCAT 1072491 >seq7 Length=68045021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| ||||| || || || || ||||||||||| ||| ||| | | |||| || Sbjct 66406325 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGTCCGTCCTC 66406267 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || |||||| | || | | || || || |||||||||||||| || Sbjct 66406266 CAACTGCTTTCCAGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 66406207 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || || | || || ||||| | |||| || |||| ||| || || || Sbjct 66406206 GATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTT 66406147 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| || ||||| Sbjct 66406146 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 66406117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357378301276325