Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 125 7e-24 seq7 104 2e-17 seq10 95.1 1e-14 seq12 89.7 5e-13 seq1 89.7 5e-13 >seq11 Length=56302525 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| |||| || | || | ||| | |||||||||||||| || |||||||| | Sbjct 496559 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCA 496500 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || |||||||| ||||| |||||| || ||||||||| ||||| Sbjct 496499 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGA 496440 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||| | ||| | | || |||| | || | |||||| | |||||| || Sbjct 496439 ATGCCTTCCTTGT-CTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAAC 496381 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| || || || ||||| |||||||| Sbjct 496380 CTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 496333 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || |||||||| | | || || ||| || |||||||| ||| Sbjct 496757 GTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 496698 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT- 127035 || |||||| | |||||| || || || || || |||||||| ||| ||| |||| Sbjct 496697 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTT 496639 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| |||||| | |||||||| || | || | || || ||||||||||| Sbjct 496638 GACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGT 496579 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| || ||||| Sbjct 496578 TTTAACAAAGATTTGCAT 496561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| ||||| |||||||| ||| ||| | ||| || || || |||||| Sbjct 497213 GTTGATTCTTTCTGAATGTTGTAATCTGCCAACGTCCTTCCATCCTCAAGTTGCTTTCCA 497154 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || ||||| || |||||||||| | || | | ||||| Sbjct 497153 GCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCTTGT-CTTGTATCTTTGCTTT 497095 Query 127037 A--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | ||| |||| || || | |||||| || || | || | || || || |||| | Sbjct 497094 AACATTG-TCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATG 497036 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || ||||| || |||||| Sbjct 497035 TCTTGACAAATATTTGCATG 497016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||| | || | ||||| ||||||||||| ||||||||||| || || Sbjct 497015 CCACCCCTCAGTCGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCC 496956 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || || || || || |||||| || |||||| || ||||| Sbjct 496955 AGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGA 496896 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||||| ||| | | || | || || | ||| || ||| Sbjct 496895 ATCCCTTCCTTATCCTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAACTTTCAACT 496836 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || || || ||||| |||||||| Sbjct 496835 TCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCAT 496789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 497690 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 497631 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 497630 CCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 497571 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 497570 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 497512 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || |||| ||| || ||||| |||||||| Sbjct 497511 GATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||||||||| ||| | || ||||| || || || ||||| || | | || | Sbjct 497462 AAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTC 497403 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || ||||| ||||| ||||||| ||||| || || || || || |||||| Sbjct 497402 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCC 497343 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | || | ||| || | |||||| || || | || Sbjct 497342 TTGT-CTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 497284 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || || |||| ||| || |||||||| |||||| Sbjct 497283 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 497244 >seq7 Length=68045021 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| ||||| || || || || ||| ||||| ||| || Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| | ||||| | |||||| || || || || ||||||||||| Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 66407119 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | |||||| | ||||| || || | ||| | ||||| Sbjct 66407118 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTT 66407059 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || ||||| || ||||| Sbjct 66407058 CCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | | ||||| ||| || ||||| || ||| Sbjct 66407453 GTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 66407394 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| | ||||| | |||||| || || || || |||||||||||| ||| | | || || Sbjct 66407393 GCGAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTT 66407335 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | |||||| || || | || | || || ||||||| || Sbjct 66407334 CACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGT 66407275 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 66407274 CTTCACAAAGATCTGCAT 66407257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | | ||||| || || ||||| || ||| Sbjct 66406997 GTCGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 66406938 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| | |||||| || | ||| || |||||||||||| ||| || ||| Sbjct 66406937 GCGAAAATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTA 66406878 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || || || || | || | || || ||||| || || Sbjct 66406877 ACATTATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTC 66406818 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 66406817 TTAACAAAAATCTGCAT 66406801 >seq10 Length=65527505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| || ||| || | ||| || || || || || Sbjct 1071383 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGTTGCTTCCCT 1071442 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||| || || || || |||||||||||| ||||| ||| Sbjct 1071443 GCAAAGATCAGTCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATTTTAGCCTTC 1071502 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | |||||| || || | || | ||||| || |||| || Sbjct 1071503 ACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTTATGGTTTTCCCAGTCAAGGTC 1071562 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 1071563 TTCACAAAAATCTGCAT 1071579 >seq12 Length=67145203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | | ||| || ||| || ||||| || || Sbjct 66287171 GTGGACTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCG 66287230 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||| |||||||| || || ||| Sbjct 66287231 GCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 66287290 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 66287291 ACATTGTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTC 66287350 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 66287351 TTCACAAAGATCTGCAT 66287367 >seq1 Length=98543444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| |||||||| | | || || ||| || ||||| ||||| ||| ||| Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 87380331 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGT 127042 ||||||||||||| || || || || || ||||||| | ||| | | || |||| | Sbjct 87380330 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATTG 87380272 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | || ||||| | || | ||| || || || |||||||| || Sbjct 87380271 TCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 87380212 Query 127103 AAAATCTGCAT 127113 || |||||||| Sbjct 87380211 AAGATCTGCAT 87380201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482106874800