Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq10 113 4e-20
seq1 105 6e-18
seq11 104 2e-17
seq7 98.7 9e-16
seq12 89.7 5e-13
>seq10
Length=65527505
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | |||||||||||| ||||| || ||||||||||| || ||||| ||||||
Sbjct 1071578 ATACCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCG 1071637
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| ||||| || || || || | ||||| | ||||||||| ||
Sbjct 1071638 GCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGT 1071697
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || ||||| || ||||| || || | || | || | ||||||||| ||
Sbjct 1071698 GGGATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTC 1071756
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || |||| || ||||| || | || || || || ||||||||
Sbjct 1071757 CACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1071807
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| | || ||||| || ||||| | || || |||||||| ||||| |||||
Sbjct 65066504 CCTCCACAAAGACTCAAGACAAGATGAATTGTAGACTCCTTTTGAATATTGTAATCAGCA 65066563
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | | ||| | ||||||||||| | ||| |||| ||| || || | |||
Sbjct 65066564 AGTGTATGATCATCCTTAAATTGTTTTCCACCAAATACTAATCTTTGTTGATCTGAGGGA 65066623
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||| |||| ||| ||| ||| | | | ||||| |||| || ||
Sbjct 65066624 ATTCCTTCTTTGTCTTCAATCTTTGCTTTAACATTGTTAATGGTGTTGGAACTCTTCACA 65066683
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||||| || || || | |||||||| ||||| |||||||||
Sbjct 65066684 TCCAGAGTAATGGTCTTTCCAATGAGAGTTTTAACAAAGATTTGCATC 65066731
Score = 98.7 bits (108), Expect = 9e-16
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
||||||| | |||||||| || || || || |||||||| || || || || |||||
Sbjct 463799 TTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAG 463858
Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
| |||| || ||| |||||||||||||| || | |||| || ||||| || || |
Sbjct 463859 CCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 463918
Query 45232 GAATGCCTTCTTTATCTTG 45250
| |||||||||||||| ||
Sbjct 463919 GTATGCCTTCTTTATCCTG 463937
>seq1
Length=98543444
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| ||||| || || || ||||| ||||| || || |||
Sbjct 57604334 CCACCACGGAGACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 57604275
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | ||| || | || ||||| ||| | ||||| || |||||||| || |||
Sbjct 57604274 AGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGA 57604215
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| || || || || || ||| | || | ||||||||||||||| ||
Sbjct 57604214 ATCCCTTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAACC 57604155
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | ||| || || ||||| ||||| || || || ||||||
Sbjct 57604154 TCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 57604107
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|| ||||| ||| | |||||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct 87380346 TGCTTTCCGGCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATC 87380287
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|| ||||| || | |||||| || || ||||| || || | ||| || ||
Sbjct 87380286 TTAGCTTTGACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCC 87380227
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||| || || || |||||
Sbjct 87380226 GTAAGAGTTTTCACGAAGATCTGCAT 87380201
>seq11
Length=56302525
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||||||||| || ||||| | ||| ||| ||
Sbjct 496769 ACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 496710
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||||| || || | |||| | |||||||| || ||||| ||||| || ||||||
Sbjct 496709 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 496650
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||||| || | |||||| || |||||| || ||||| | || ||
Sbjct 496649 ATTTTAGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTT 496590
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| |||||||| ||||| |||||||||
Sbjct 496589 CCGGTCAGAGTTTTAACAAAGATTTGCATC 496560
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || || || |||||||| || ||||| | ||| ||| ||
Sbjct 496541 ACAAGATGAAGGGTAGACTCTTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCA 496482
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||||| || || | |||| || ||||| || || ||||||||||| || ||||||
Sbjct 496481 AGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGA 496422
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || ||||| || | |||||| ||| ||| || || ||||| | || ||
Sbjct 496421 ATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCAACCTCAAGAGTGATGGTCTTT 496362
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || || ||||| || ||||||
Sbjct 496361 CCGGTGAGTGTCTTAACAAATATCTGCATC 496332
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187
|||||| ||||| || ||||| ||||| ||||| || || || | || | ||
Sbjct 497457 CAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTCCTCCCGTC 497398
Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247
|| | |||||| || || | ||||| || || ||||| || ||||| || || || ||
Sbjct 497397 CTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGAATACCCTCCTTGTC 497338
Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307
|||||| ||| ||| | || | ||| || ||| ||| || || | |||| ||
Sbjct 497337 TTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGT 497278
Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||| || ||||||||||||||
Sbjct 497277 CTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 497245
>seq7
Length=68045021
Score = 98.7 bits (108), Expect = 9e-16
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| || || ||||| | | ||| | ||| || || || ||||| ||||| || || ||
Sbjct 66406574 ATACCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 66406515
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | ||| ||| ||||| || |||||||| | ||||| | |||||||| ||
Sbjct 66406514 GCT-AGGGTGCGGCCATCTTCCAACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 66406456
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288
||||||||||| ||||| || || || |||| || | || | |||||| || |
Sbjct 66406455 GGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGA-CGTTGTCAATGGTGTCTGAGCTTT 66406397
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| || || |||| ||| || || || ||||| || || || || |||||
Sbjct 66406396 CGACCTCAAGGGTAATCGTCTTACCCGTGAGAGTCTTCACGAAGATCTGCAT 66406345
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | ||||| | ||| | ||||| || || ||||||||||| ||||| ||
Sbjct 66407258 ATTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCC 66407199
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| || | || || || || | ||||| | |||||||| ||
Sbjct 66407198 GCCAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGG 66407139
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || || || ||||| || || |||| || | ||||||||| |||
Sbjct 66407138 GGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCA 66407079
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | ||||| ||||| || || || ||||| ||||||||
Sbjct 66407078 ACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
>seq12
Length=67145203
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172
|| || ||||| | | || || || || || || ||||| ||||| || || || |||
Sbjct 66287141 CCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT 66287200
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| || ||| || | || || || ||| | |||||||| |||||||| || ||
Sbjct 66287201 AGCG-TTCGGCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGG 66287259
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
||||||||| || |||||||| || || | || | |||||| || ||||| ||
Sbjct 66287260 AATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTAC 66287319
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | |||| || ||||| || || || || ||||| || |||||
Sbjct 66287320 CTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 66287367
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172
|| || ||||| | | || || || || || |||||||| ||||| || || || |||
Sbjct 66338202 CCACCACGGAGACGAAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 66338143
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| || ||| || | || ||||| ||| | ||||| | |||||||| || ||
Sbjct 66338142 AGCG-TTCGGCCATCCTCAAGCTGCTTTCCCGCGAAAATCAACCTCTGCTGGTCTGGTGG 66338084
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292
||||||||| || || ||||| || || | || | ||| || || ||||| ||
Sbjct 66338083 AATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTATCCGATGACTCTAC 66338024
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | |||| || ||||| ||||| || || ||||| || |||||
Sbjct 66338023 CTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 66337976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451985430624200
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