Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 82.4 9e-11 >seq7 Length=68045021 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 63395472 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 63395531 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | || | || || || | ||||| |||||||| |||||||| ||||| || | Sbjct 63395532 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 63395591 Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| ||||| | ||||||||| | | || | ||| | | || |||| || || Sbjct 63395592 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 63395648 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGA 12939 || |||||||| |||| || || || || || |||||| ||| ||| ||| | Sbjct 63395649 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 63395707 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || |||| ||| || ||||| ||||||||||| || || Sbjct 63395708 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAA 63395753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483081498200