Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq12 125 8e-24
seq1 125 8e-24
seq7 122 1e-22
seq11 98.7 1e-15
seq10 89.7 6e-13
>seq12
Length=67145203
Score = 125 bits (138), Expect = 8e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | ||| || || | || ||||||||||| ||||||||
Sbjct 66287176 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 66287235
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||||| ||||| ||| | |
Sbjct 66287236 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 66287295
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || |||| || ||||| ||||||||||| || || ||
Sbjct 66287296 GTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 66287355
Query 46582 AAAGATTTGCATTTTGCAC 46600
|||||| |||||||| |||
Sbjct 66287356 AAAGATCTGCATTTTTCAC 66287374
>seq1
Length=98543444
Score = 125 bits (138), Expect = 8e-24
Identities = 149/201 (74%), Gaps = 1/201 (0%)
Strand=Plus/Minus
Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|||| ||||| || || ||||| || | |||||| || | || ||||||||||| |||
Sbjct 87380397 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 87380338
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| ||||| ||||||||||| | || | | |||||||| ||||| |||
Sbjct 87380337 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 87380278
Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
| | | | |||||||||||||| || || | |||||| || || ||||| || |||
Sbjct 87380277 ACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTT 87380218
Query 46577 TTAACAAAGATTTGCATTTTG 46597
|| || ||||| |||||||||
Sbjct 87380217 TTCACGAAGATCTGCATTTTG 87380197
Score = 114 bits (126), Expect = 1e-20
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || |
Sbjct 57604323 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 57604264
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| |||||||| ||||| ||||||||||| | || | | |||||
Sbjct 57604263 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 57604204
Query 46498 GTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555
|||| |||||| ||| | |||| | |||||| || || || || | |||
Sbjct 57604203 GTCCTGGATCTTGGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTG 57604146
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || || ||||| || ||||| || ||||| ||||| ||
Sbjct 57604145 ATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105
>seq7
Length=68045021
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| |||| ||||||||||| || |||||
Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | ||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| |||||| |||| |||||||| || || || || || |||||
Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813
Query 46582 AAAGATTTGCAT 46593
||| || |||||
Sbjct 66406812 AAAAATCTGCAT 66406801
Score = 114 bits (126), Expect = 1e-20
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||||||||| || ||||| | | |||||| | || ||
Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||||||| || || ||||| | ||||||||| | || | | |||||||||
Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 66407119
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
|||||| ||||| | | | ||||| |||| || || |||| ||||||||
Sbjct 66407118 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 66407062
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || ||||||||||||||
Sbjct 66407061 TTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||| ||||| |||||||| | || ||||| | || |||
Sbjct 66406781 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCG 66406722
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| ||||| | ||||||||| | || | | ||||| ||| |
Sbjct 66406721 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGG 66406662
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||| | ||| | | | |||||| |||||| |||| |||||||| ||
Sbjct 66406661 ATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTT 66406603
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || ||||| ||||| |||||
Sbjct 66406602 TCCGGTAAGAGTCTTAACGAAGATCTGCAT 66406573
Score = 100 bits (110), Expect = 3e-16
Identities = 143/198 (72%), Gaps = 10/198 (5%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| | || ||||| | || || |||||||| || |||||
Sbjct 66407448 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 66407389
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519
||||| | ||||||||| | || | | |||||||||| ||||| ||| |
Sbjct 66407388 AATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 66407329
Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
|||| | ||||| ||| ||||| |||| |||||||| || || |||| ||
Sbjct 66407328 GTCG--ATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTC 66407274
Query 46577 TTAACAAAGATTTGCATT 46594
|| |||||||| ||||||
Sbjct 66407273 TTCACAAAGATCTGCATT 66407256
>seq11
Length=56302525
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| ||||||||||||||||| | || |||||| ||||| |||||||| |
Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | |||| || || || || || || || ||||| ||||| ||||| | ||
Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352
Query 46487 ACGCTCTCCTTGTC 46500
| | |||||||||
Sbjct 497351 ATACCCTCCTTGTC 497338
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|||||||| ||||||||||||||||| | || |||||| ||||| |||||||| |
Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | | || || || || || || || || ||||| ||||| ||||| | ||
Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 46544
| | ||||||||| ||||| | ||| | | | || | || || | || |
Sbjct 497579 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 497522
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| ||||| || || || |||| || || |||||||| |||||
Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473
>seq10
Length=65527505
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/207 (71%), Gaps = 9/207 (4%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || || || ||||| || | |||||| || |||| || |||||||| || || ||
Sbjct 1072528 CTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAA 1072587
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| | ||||||||| | || | || ||||||||| |||||| ||| | | |
Sbjct 1072588 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGG-CTTTAACAT 1072646
Query 46522 CGCCACCG-TGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577
| || | |||| ||| |||||| || | ||||| || || || || || ||||
Sbjct 1072647 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTT 1072703
Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603
||||||| || ||||| | | ||||||
Sbjct 1072704 TAACAAATATCTGCATCTGTACACAAA 1072730
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || | | |||||| ||||| | || ||||| || |||||||| |||| |
Sbjct 1071581 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCT 1071640
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| || | | || || | ||||||||| || || ||||| | |||||||| | ||
Sbjct 1071641 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 1071700
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545
| | ||| |||||| ||||| ||| | ||| | || | ||||| ||||||
Sbjct 1071701 ATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTCCAC 1071759
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | || || || ||||| |||| || || || ||||||||||||
Sbjct 1071760 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 1071808
Score = 82.4 bits (90), Expect = 9e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || | || || | |||| || ||||||||||| || ||
Sbjct 1072072 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAA 1072131
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | |||||||| | || | || |||||||| |||||| ||| | |
Sbjct 1072132 GATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATT 1072191
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||| || || | |||||||| || || |||| || || ||
Sbjct 1072192 GTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCAC 1072251
Query 46582 AAAGATTTGCATT 46594
||| |||||||||
Sbjct 1072252 AAAAATTTGCATT 1072264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565216179065400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |