Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 125 8e-24 seq1 125 8e-24 seq7 122 1e-22 seq11 98.7 1e-15 seq10 89.7 6e-13 >seq12 Length=67145203 Score = 125 bits (138), Expect = 8e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| |||||||| Sbjct 66287176 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 66287235 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| ||| | | Sbjct 66287236 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 66287295 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || |||| || ||||| ||||||||||| || || || Sbjct 66287296 GTCAATGGTGTCTGATGACTCTACCTCCAAGGTAATGGTCTTGCCCGTCAGGGTCTTCAC 66287355 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 66287356 AAAGATCTGCATTTTTCAC 66287374 >seq1 Length=98543444 Score = 125 bits (138), Expect = 8e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| ||||| || || ||||| || | |||||| || | || ||||||||||| ||| Sbjct 87380397 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 87380338 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||| | || | | |||||||| ||||| ||| Sbjct 87380337 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 87380278 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||||||||| || || | |||||| || || ||||| || ||| Sbjct 87380277 ACATTGTCAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTT 87380218 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||||||| Sbjct 87380217 TTCACGAAGATCTGCATTTTG 87380197 Score = 114 bits (126), Expect = 1e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || | Sbjct 57604323 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 57604264 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 57604263 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 57604204 Query 46498 GTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||| |||||| ||| | |||| | |||||| || || || || | ||| Sbjct 57604203 GTCCTGGATCTTGGCTTTCACATTGTCG--ATGGTGTCGGAAGACTCAACCTCTAGGGTG 57604146 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || ||||| || ||||| || ||||| ||||| || Sbjct 57604145 ATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 57604105 >seq7 Length=68045021 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 66406992 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 66406933 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | |||||||||| |||||| ||| | | Sbjct 66406932 AATCAACCTCTGCTGGTCTGAAGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 66406873 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| |||| |||||||| || || || || || ||||| Sbjct 66406872 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTAAC 66406813 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 66406812 AAAAATCTGCAT 66406801 Score = 114 bits (126), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||||||||| || ||||| | | |||||| | || || Sbjct 66407238 CACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCGCCAAAGTGCGGCCATCCTC 66407179 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || ||||| | ||||||||| | || | | ||||||||| Sbjct 66407178 GAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 66407119 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||||| | | | ||||| |||| || || |||| |||||||| Sbjct 66407118 GATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAGGGTGATGGT 66407062 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || |||||||||||||| Sbjct 66407061 TTTCCCGGTAAGGGTCTTCACAAAGATTTGCAT 66407029 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||| ||||| |||||||| | || ||||| | || ||| Sbjct 66406781 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCG 66406722 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| ||||| | ||||||||| | || | | ||||| ||| | Sbjct 66406721 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGG 66406662 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | | | |||||| |||||| |||| |||||||| || Sbjct 66406661 ATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTT 66406603 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||| ||||| ||||| Sbjct 66406602 TCCGGTAAGAGTCTTAACGAAGATCTGCAT 66406573 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || ||||| | || || |||||||| || ||||| Sbjct 66407448 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 66407389 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 ||||| | ||||||||| | || | | |||||||||| ||||| ||| | Sbjct 66407388 AATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 66407329 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| ||| ||||| |||| |||||||| || || |||| || Sbjct 66407328 GTCG--ATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTC 66407274 Query 46577 TTAACAAAGATTTGCATT 46594 || |||||||| |||||| Sbjct 66407273 TTCACAAAGATCTGCATT 66407256 >seq11 Length=56302525 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||||||| | || |||||| ||||| |||||||| | Sbjct 497471 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497412 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | |||| || || || || || || || ||||| ||||| ||||| | || Sbjct 497411 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497352 Query 46487 ACGCTCTCCTTGTC 46500 | | ||||||||| Sbjct 497351 ATACCCTCCTTGTC 497338 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||||||| | || |||||| ||||| |||||||| | Sbjct 497699 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 497640 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | | || || || || || || || || ||||| ||||| ||||| | || Sbjct 497639 AGAGTCCTCCCATCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 497580 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 46544 | | ||||||||| ||||| | ||| | | | || | || || | || | Sbjct 497579 ATACCCTCCTTGTCTTGAATCTT-TGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 497522 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || || || |||| || || |||||||| ||||| Sbjct 497521 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 497473 >seq10 Length=65527505 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/207 (71%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || ||||| || | |||||| || |||| || |||||||| || || || Sbjct 1072528 CTCTTTCTGAATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGCTGCTTTCCTGCAAA 1072587 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 1072588 GATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGG-CTTTAACAT 1072646 Query 46522 CGCCACCG-TGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | || | |||| ||| |||||| || | ||||| || || || || || |||| Sbjct 1072647 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTT 1072703 Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603 ||||||| || ||||| | | |||||| Sbjct 1072704 TAACAAATATCTGCATCTGTACACAAA 1072730 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | |||||| ||||| | || ||||| || |||||||| |||| | Sbjct 1071581 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTTGATTCCTTCTGAATATTGTAATCGGCT 1071640 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || | ||||||||| || || ||||| | |||||||| | || Sbjct 1071641 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 1071700 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545 | | ||| |||||| ||||| ||| | ||| | || | ||||| |||||| Sbjct 1071701 ATACCCTCTTTGTCCTGAATCTTGGCCTTTA-CGTTGTCAATGGTGTCGGAGCTTTCCAC 1071759 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || ||||| |||| || || || |||||||||||| Sbjct 1071760 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 1071808 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || || | |||| || ||||||||||| || || Sbjct 1072072 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCCGCAAA 1072131 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | || |||||||| |||||| ||| | | Sbjct 1072132 GATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTAACATT 1072191 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || | |||||||| || || |||| || || || Sbjct 1072192 GTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTCAC 1072251 Query 46582 AAAGATTTGCATT 46594 ||| ||||||||| Sbjct 1072252 AAAAATTTGCATT 1072264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565216179065400