Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq7 127 3e-24
seq4 123 3e-23
>seq7
Length=68045021
Score = 127 bits (140), Expect = 3e-24
Identities = 308/455 (68%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| || ||||| | || | || ||||| ||||| | ||||| ||||| ||
Sbjct 63395472 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 63395531
Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
| || | ||||| || ||| || | ||||||||||| || ||||| || |||||
Sbjct 63395532 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 63395589
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062
| || ||||||| ||||||||| || | | | | |||| | | |||| || |
Sbjct 63395590 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 63395647
Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121
| |||||||| ||||||| || || ||||| || ||||| | | | ||| |||
Sbjct 63395648 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 63395706
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
||||| || || || ||| || ||||||||||||||||| || || | || | |||
Sbjct 63395707 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA 63395766
Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|||| || || || ||| | |||||| ||||| || || || | || || ||
Sbjct 63395767 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 63395825
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 16299
||||| || ||| | || || ||||| ||||| | | ||| || | |||
Sbjct 63395826 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTA 63395883
Query 16300 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333
|||||||||||| ||| | ||| || || | |||
Sbjct 63395884 AATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 63395918
>seq4
Length=66470942
Score = 123 bits (136), Expect = 3e-23
Identities = 198/279 (71%), Gaps = 8/279 (3%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| |||||||| || ||||||||||| |||||||| || |||| |||||||| |
Sbjct 65981982 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 65981923
Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
| ||| |||| | |||| ||||||| ||||||||||||||||| || || || ||
Sbjct 65981922 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 65981863
Query 16095 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150
||| ||| | || || ||||| | ||||| || || || | || ||||||||
Sbjct 65981862 GGT--GCTTTAGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACACC 65981807
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210
||||||| ||| ||||| | || || | ||| || || || ||| || |||||
Sbjct 65981806 CACAAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACC 65981747
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| | |||| || | ||| ||||| || ||||||||
Sbjct 65981746 AGCTACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 65981708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620717997064400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |