Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4 131 2e-25
seq7 123 3e-23
>seq4
Length=66470942
Score = 131 bits (144), Expect = 2e-25
Identities = 196/276 (71%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| |||||||| || |||||||| || |||||||| || |||| |||||||| |
Sbjct 65981982 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCACCT 65981923
Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
| ||| |||| | |||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 65981922 CCAAGACCTGCACCTCTTTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATACAA 65981863
Query 9402 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460
|| || ||| | || | ||||| | ||| | ||| || || |||||||| ||
Sbjct 65981862 GG-TGCTTTAGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACACCCAC 65981804
Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520
||||| ||| ||||| | || || | ||| || || || ||| || ||||| ||
Sbjct 65981803 AAACAACTCAACAAACTCTGACGCTGCACAAGAGAAAAATGGCACACCAGCCTCACCAGC 65981744
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| |||| || | ||| ||||| || ||||||||
Sbjct 65981743 TACTGCTCTAGCTAAAAGGGTCTTTCCAGTACCTGG 65981708
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || |||||||| || || ||||| | ||| ||| ||||| | |||
Sbjct 50409329 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 50409270
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| | ||||||| | |||||| ||||| || || |||||| || | |
Sbjct 50409269 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 50409210
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347
|| | ||| | ||| | ||| || |||||| | | || | | | | ||| ||
Sbjct 50409209 ACTCTCATCAGCATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAA 50409150
Query 107348 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391
| | ||||||||||||| |||||||||| || | ||| ||||
Sbjct 50409149 GACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 50409106
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507
||||| |||||| || ||||| || | |||||| ||||| || ||| | ||||
Sbjct 4386849 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 4386908
Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567
|| || | |||||| ||||||||||| ||| ||| || || || | ||||| |||||
Sbjct 4386909 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 4386968
Query 106568 CTCTTTTTGTTGCACGCATCCT 106589
|| ||| |||| || | |||||
Sbjct 4386969 CTTTTTCTGTTACAAGTATCCT 4386990
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507
||||| | || || || ||||| || | |||||||||||| || ||| | |||
Sbjct 50410669 ACATATCTAGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTAGTG 50410610
Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567
||||| | ||| |||||||||||||| ||| ||| || || || | ||||| |||||
Sbjct 50410609 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 50410550
Query 106568 CTCTTTTTGTTGCACGCATCCT 106589
|| ||| | ||||| | |||||
Sbjct 50410549 CTTTTTCTATTGCAAGAATCCT 50410528
>seq7
Length=68045021
Score = 123 bits (136), Expect = 3e-23
Identities = 305/454 (67%), Gaps = 14/454 (3%)
Strand=Plus/Plus
Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253
|||||| || ||||| | || | || ||||| ||||| | ||||| || || ||
Sbjct 63395472 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 63395531
Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
| || | ||||| || ||| || | ||||||||||| || ||||| ||||||||
Sbjct 63395532 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 63395589
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369
| || ||||||| ||||||||| || | | | | |||| | | |||| || |
Sbjct 63395590 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 63395647
Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429
| |||||||| ||||||| || ||||| || || |||||| ||| | | || |
Sbjct 63395648 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 63395707
Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489
|||| || || | ||| || ||||||||||||||||| || || | || | |||
Sbjct 63395708 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAACCTGAA- 63395766
Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
|||| || || || ||| | |||||| ||||| || || || | || || ||
Sbjct 63395767 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 63395826
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGT-- 9606
||||| || ||| | || || |||| ||||| | | ||| || | |||
Sbjct 63395827 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAA--TACGAGCCCCTACTGCAGTAA 63395884
Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
|||||||||||| ||| | ||| || || | |||
Sbjct 63395885 ATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 63395918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589957606379800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |