Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_015265.1
Length=37236
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 571 1e-158
>seq1141
Length=3271
Score = 571 bits (632), Expect = 1e-158
Identities = 659/883 (75%), Gaps = 22/883 (2%)
Strand=Plus/Plus
Query 32260 GCGTTCCTCGAATCGATCTTCGACTATCAGCGCAACTGGTATCGCGCCGGCTTCAAGGAA 32319
|||||| || || || |||||||| ||||| |||||| || || ||| ||
Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTACGAAGCGGGTCTCAGAGAG 2458
Query 32320 CGGATCCGCAACGTCCTGAAGAGCCGGCAGATCGGCGCGACCTGGTACTTCGCGCGCGAG 32379
|| |||||||| || ||||||||||| |||||||| || || ||||| ||||| || |||
Sbjct 2459 CGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGAG 2518
Query 32380 GCGTTGCTCGACGCGCTGAACACAGGCCGCAATCAAATCTTCCTGTCGGCCAGCAAGGCA 32439
|| || | || ||| ||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 2519 GCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGCG 2578
Query 32440 CAGGCGCACGTGTTCCGCCAGTACATCGTGCAGTTCGCGAAAGACGCGGTCGACGTCGAG 32499
||||| ||||| ||| || |||||| | ||||||||||| || || | || ||| |||
Sbjct 2579 CAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGAG 2638
Query 32500 CTGAAGGGCGACCCGATCGTGCTGCCGAACGGTGCGACGCTGTACTTCCTCGGCACCAAC 32559
||||||||||| ||||| ||| |||||||||| ||||||||||| ||||||||||| |||
Sbjct 2639 CTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAAC 2698
Query 32560 GCGCGCACTGCGCAGAGCTACCACGGCAACCTGTATTTCGACGAGTACTTCTGGGTGCCG 32619
|| ||||| ||||||||||| ||||||||||| ||| | ||||||||||||||| | | |
Sbjct 2699 GCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCAG 2758
Query 32620 CGCTTCCAGGAGCTGCGCAAGGTCGCCTCCGGCATGGCGATTCACGACCAGTGGCGGCAG 32679
|||||||| |||||||||||||| |||||||| ||||| || ||| |||||||||||
Sbjct 2759 CGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCAG 2818
Query 32680 ACGTATTTCTCGACGCCGTCGAGCCTCGCGCACGACGCTTATCCGTTCTGGTCGGGCAAG 32739
|| |||||||||||||| |||||||| || ||||| || || ||||||||||| ||| |
Sbjct 2819 ACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGCG 2878
Query 32740 CTGTTCAACCGTGGCCGACCGAAAGATCAGCACGTATCGATCGACATTTCGCACGCGGCG 32799
|||||||| || || || ||| || | ||| | | ||| | ||||||
Sbjct 2879 CTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCACGCGAAC 2938
Query 32800 CTGGCCGCGGGCCGTTCGTGTCAGGACGGCCAGTGGCGCCAGATCGTCACGGTCGAGGAC 32859
|| | ||||| ||| |||||| |||||| ||||| |||||||| || |||
Sbjct 2939 TTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGAAGAC 2998
Query 32860 GCCGTGCGCGGCGGTTGCAACAGCGGGGCGCGGCCGCTCTTCAATCTCGACCGGCTACGA 32919
||| | ||| || |||||| || ||| | ||||||| | | ||
Sbjct 2999 GCCATCGCCGGTGGCTGCAAC---------------CTGTTCGACCTCGACCAGTTGCGG 3043
Query 32920 CTGGAATACAGCCCCGAGGAATACGCGAACCTGCTGCTGTGCCAGTTCATCGACGATTCG 32979
||||| |||||| | ||| | || |||||||||| ||||| |||||||| || ||
Sbjct 3044 CTGGAGTACAGCGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACG 3103
Query 32980 CTGTCGGTTTTCCCGCTGACGGTGTTGCAGCCGTGCATGGTCGATACCTGGGAGGTGTGG 33039
|| || ||||||||| || || | || |||||||||| | |||||||||||||
Sbjct 3104 GCCTCTGTCTTCCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGG 3163
Query 33040 GACGACTTCAAGCCACT-GTACCTGCGCCCGTTCGGCGACGAGGAGGTCTGGATCGGCTA 33098
|| |||||| |||| | || | ||||| ||||| | ||||| ||| | |||||
Sbjct 3164 GAGGACTTC-CGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTA 3222
Query 33099 CGACCCG-TCGCATACG--GGCGACAGCGCCG-GCTGCGTGGT 33137
||||||| || || |||||||| |||| |||| |||||
Sbjct 3223 CGACCCGAACGGCGGCGGTGGCGACAGTGCCGCGCTG-GTGGT 3264
Score = 206 bits (228), Expect = 6e-49
Identities = 246/330 (75%), Gaps = 8/330 (2%)
Strand=Plus/Plus
Query 30425 ATGATCCGATCGAGCGCCGCGCGTCGAATGATCGCGTCGCGCAGACGAGCCTGGAAGTCC 30484
||||| |||||||||||| ||| || | ||| |||||||| | || | |||||||||
Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60
Query 30485 GGGAACTTCGCCCAGGCGTCGAGGCGCTGATACGTGATGTGCGTGTCGTAGTTCGTCTTC 30544
|||||||||||||| ||||| |||||||| || |||||||| ||||| |||| |||| |
Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120
Query 30545 TCGGCGCGATAGCGTTGGCTGTCGAGCGTCGCGATGTCGCGCGTTTCGCGCTCACGCTTG 30604
||| ||| || | | || |||||||| ||||||| || | || || ||||
Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCGGTC---CTTG 177
Query 30605 ---CTCGTGTCGGTGCGGCTCGCGGACGGCCCCGAAACGCCGAGGCCGACCTTCTCGCCT 30661
||||||||||| || || ||| || || ||||||||||||| ||||||||||
Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237
Query 30662 TCCATCTCGGTCACGCCGATCACGTTGATGCTG-TTCAGGAAGGCGCTCGATTCCTGCGT 30720
||| ||| |||||| |||||||| ||| | || || | ||||||||||||
Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGAT-CTGCTGGAGAAATTCACTCGATTCCTGCAC 296
Query 30721 CTTGGTTTCGAGCGTCTGCTGCACGGTCGG 30750
||| ||||| ||| |||||| ||| ||||
Sbjct 297 CTTCGTTTCCAGCCGCTGCTGGACGCTCGG 326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119029154467020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |