Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1141 571 1e-158 >seq1141 Length=3271 Score = 571 bits (632), Expect = 1e-158 Identities = 659/883 (75%), Gaps = 22/883 (2%) Strand=Plus/Plus Query 32260 GCGTTCCTCGAATCGATCTTCGACTATCAGCGCAACTGGTATCGCGCCGGCTTCAAGGAA 32319 |||||| || || || |||||||| ||||| |||||| || || ||| || Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTACGAAGCGGGTCTCAGAGAG 2458 Query 32320 CGGATCCGCAACGTCCTGAAGAGCCGGCAGATCGGCGCGACCTGGTACTTCGCGCGCGAG 32379 || |||||||| || ||||||||||| |||||||| || || ||||| ||||| || ||| Sbjct 2459 CGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGGAG 2518 Query 32380 GCGTTGCTCGACGCGCTGAACACAGGCCGCAATCAAATCTTCCTGTCGGCCAGCAAGGCA 32439 || || | || ||| ||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 2519 GCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGGCG 2578 Query 32440 CAGGCGCACGTGTTCCGCCAGTACATCGTGCAGTTCGCGAAAGACGCGGTCGACGTCGAG 32499 ||||| ||||| ||| || |||||| | ||||||||||| || || | || ||| ||| Sbjct 2579 CAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGGAG 2638 Query 32500 CTGAAGGGCGACCCGATCGTGCTGCCGAACGGTGCGACGCTGTACTTCCTCGGCACCAAC 32559 ||||||||||| ||||| ||| |||||||||| ||||||||||| ||||||||||| ||| Sbjct 2639 CTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAAAC 2698 Query 32560 GCGCGCACTGCGCAGAGCTACCACGGCAACCTGTATTTCGACGAGTACTTCTGGGTGCCG 32619 || ||||| ||||||||||| ||||||||||| ||| | ||||||||||||||| | | | Sbjct 2699 GCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCCAG 2758 Query 32620 CGCTTCCAGGAGCTGCGCAAGGTCGCCTCCGGCATGGCGATTCACGACCAGTGGCGGCAG 32679 |||||||| |||||||||||||| |||||||| ||||| || ||| ||||||||||| Sbjct 2759 CGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGCAG 2818 Query 32680 ACGTATTTCTCGACGCCGTCGAGCCTCGCGCACGACGCTTATCCGTTCTGGTCGGGCAAG 32739 || |||||||||||||| |||||||| || ||||| || || ||||||||||| ||| | Sbjct 2819 ACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCGCG 2878 Query 32740 CTGTTCAACCGTGGCCGACCGAAAGATCAGCACGTATCGATCGACATTTCGCACGCGGCG 32799 |||||||| || || || ||| || | ||| | | ||| | |||||| Sbjct 2879 CTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCACGCGAAC 2938 Query 32800 CTGGCCGCGGGCCGTTCGTGTCAGGACGGCCAGTGGCGCCAGATCGTCACGGTCGAGGAC 32859 || | ||||| ||| |||||| |||||| ||||| |||||||| || ||| Sbjct 2939 TTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGAAGAC 2998 Query 32860 GCCGTGCGCGGCGGTTGCAACAGCGGGGCGCGGCCGCTCTTCAATCTCGACCGGCTACGA 32919 ||| | ||| || |||||| || ||| | ||||||| | | || Sbjct 2999 GCCATCGCCGGTGGCTGCAAC---------------CTGTTCGACCTCGACCAGTTGCGG 3043 Query 32920 CTGGAATACAGCCCCGAGGAATACGCGAACCTGCTGCTGTGCCAGTTCATCGACGATTCG 32979 ||||| |||||| | ||| | || |||||||||| ||||| |||||||| || || Sbjct 3044 CTGGAGTACAGCGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACG 3103 Query 32980 CTGTCGGTTTTCCCGCTGACGGTGTTGCAGCCGTGCATGGTCGATACCTGGGAGGTGTGG 33039 || || ||||||||| || || | || |||||||||| | ||||||||||||| Sbjct 3104 GCCTCTGTCTTCCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGG 3163 Query 33040 GACGACTTCAAGCCACT-GTACCTGCGCCCGTTCGGCGACGAGGAGGTCTGGATCGGCTA 33098 || |||||| |||| | || | ||||| ||||| | ||||| ||| | ||||| Sbjct 3164 GAGGACTTC-CGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTA 3222 Query 33099 CGACCCG-TCGCATACG--GGCGACAGCGCCG-GCTGCGTGGT 33137 ||||||| || || |||||||| |||| |||| ||||| Sbjct 3223 CGACCCGAACGGCGGCGGTGGCGACAGTGCCGCGCTG-GTGGT 3264 Score = 206 bits (228), Expect = 6e-49 Identities = 246/330 (75%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 30425 ATGATCCGATCGAGCGCCGCGCGTCGAATGATCGCGTCGCGCAGACGAGCCTGGAAGTCC 30484 ||||| |||||||||||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 1 ATGATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCG 60 Query 30485 GGGAACTTCGCCCAGGCGTCGAGGCGCTGATACGTGATGTGCGTGTCGTAGTTCGTCTTC 30544 |||||||||||||| ||||| |||||||| || |||||||| ||||| |||| |||| | Sbjct 61 GGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGC 120 Query 30545 TCGGCGCGATAGCGTTGGCTGTCGAGCGTCGCGATGTCGCGCGTTTCGCGCTCACGCTTG 30604 ||| ||| || | | || |||||||| ||||||| || | || || |||| Sbjct 121 TCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCGGTC---CTTG 177 Query 30605 ---CTCGTGTCGGTGCGGCTCGCGGACGGCCCCGAAACGCCGAGGCCGACCTTCTCGCCT 30661 ||||||||||| || || ||| || || ||||||||||||| |||||||||| Sbjct 178 ACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCGCCT 237 Query 30662 TCCATCTCGGTCACGCCGATCACGTTGATGCTG-TTCAGGAAGGCGCTCGATTCCTGCGT 30720 ||| ||| |||||| |||||||| ||| | || || | |||||||||||| Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGAT-CTGCTGGAGAAATTCACTCGATTCCTGCAC 296 Query 30721 CTTGGTTTCGAGCGTCTGCTGCACGGTCGG 30750 ||| ||||| ||| |||||| ||| |||| Sbjct 297 CTTCGTTTCCAGCCGCTGCTGGACGCTCGG 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119029154467020