Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_015266.1
Length=40555
Score E
Sequences producing significant alignments: (Bits) Value
seq1141 367 3e-97
>seq1141
Length=3271
Score = 367 bits (406), Expect = 3e-97
Identities = 616/882 (70%), Gaps = 21/882 (2%)
Strand=Plus/Plus
Query 28831 GCGTTCCGCGAATCACTGTTCGACTACCAGAAGGTCTGGTATCGAAACGGCGATCAGCAG 28890
|||||| | || ||| |||||||||||||| | |||||| |||| ||| |||| ||
Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAG-AG 2456
Query 28891 A-CG----CGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCGCACGCG 28945
| || |||||| | |||||| || |||||||| ||||| |||||||||||||| |
Sbjct 2457 AGCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGG 2516
Query 28946 AGGCATTCGTCGACGCGCTCGATACCGGCCGCAACCAGATTTTTCTATCGGCCAGCAAAG 29005
|||| ||| | || ||| | || || ||||| |||||||| | ||||||||||| |
Sbjct 2517 AGGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGG 2576
Query 29006 CACAGGCGCACGTCTTCAAACAGTACATCGTGCAGTTCGCTCGTGACGTGGCCGACGTTG 29065
| ||||| ||||| ||||| || |||||| | |||||||| || | |||| ||| |
Sbjct 2577 CGCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGG 2636
Query 29066 AGCTGACGGGCGATCCGATCATTCTGCCGAACGGTGCGACGCTGTACTTCCTAGGGACGA 29125
|||||| |||||| ||||| | |||||||||| ||||||||||| ||||| || || |
Sbjct 2637 AGCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAA 2696
Query 29126 ACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATATTTCTGGGTGC 29185
|| | |||||||||||| ||||||||||| || || | ||||| || |||||| | |
Sbjct 2697 ACGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCC 2756
Query 29186 CGAAGTTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGCGGC 29245
| |||| |||||| | || || || || ||||| || ||| |||||||
Sbjct 2757 AGCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGC 2816
Query 29246 TGACCTACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCGGCG 29305
||| || ||| ||||| ||||| |||| ||||| ||| |||||||| ||||
Sbjct 2817 AGACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCG 2876
Query 29306 CCGATG-CGAATCGTGGGCGCGCGCCTAGCGATCGTATCCAGATCGACACGAGCCACGAA 29364
|| || ||||| ||||| | || | |||| | ||| ||||||
Sbjct 2877 -CGCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC--- 2932
Query 29365 GCGCTCGTGC--GA-GGCATGCTGGGCGAGGACGAGCAGTGGCGTCAGATCGTCACCGTA 29421
||| | ||| || ||| || | ||| ||||| |||||| ||||| ||||| ||
Sbjct 2933 GCGAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTG 2992
Query 29422 CTCGATGCGATCGAGGGCGGCTGCGACTTGTTCGACCTGGAGAGACTTCGGCGCCGGTAC 29481
|| || |||| || |||||| || |||||||||| || | |||| ||||
Sbjct 2993 GAAGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTAC 3052
Query 29482 AGTGCAGAGGCTTTCGCGAACCTGCTGATGTGCCAGTTCATCGACGATTCGGTGTCGGTG 29541
|| | | || |||| |||||||||||||||| |||||||| || ||| || ||
Sbjct 3053 AGCGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTC 3112
Query 29542 TTCAAGCTGGCCGAGCTGCAGCGCTGCATGGTCGACTCGTGGGAGGAATGGGCCGACGAC 29601
||| |||| | ||| |||| ||||||||||| ||||||| ||| || |||
Sbjct 3113 TTCCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGG---GAGGAC 3169
Query 29602 TTCTCGCNNNNNNNNNNNCGTCCGTTCGGCTATCGCGAGGTGTGGGTTGGCTACGATCCG 29661
||| | || || ||||| |||| ||||| ||||| |||||||| |||
Sbjct 3170 TTCCGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCCG 3229
Query 29662 -GCGCTGAC--TGGCGACTCAGCCGGTCTCGTTGTCGTGGCG 29700
|| | | ||||||| |||| || || |||||||||
Sbjct 3230 AACGGCGGCGGTGGCGACAGTGCCGCGCTGGTGGTCGTGGCG 3271
Score = 149 bits (164), Expect = 2e-31
Identities = 268/387 (69%), Gaps = 16/387 (4%)
Strand=Plus/Plus
Query 26997 ATGATCCGGTCGAGCGCAGACTGGTTG---AGGATCACATTGCGGATGCGTTGCTGGAAG 27053
||||| || |||||||| |||| | ||||| | | ||| ||||| |||||||
Sbjct 1 ATGATGCGATCGAGCGC---CTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAG 57
Query 27054 TCGGGGAATTTCGCCCAGGCGTCGAGCTTGCGGTACGTAATGGCCGTGTCGTAGTCGGTT 27113
|||||||| |||||||| ||||| || |||| || ||| ||||| ||| |||
Sbjct 58 TCGGGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTC 117
Query 27114 TTCTCGCAGCGGTAGCGGTTGCTGTCCAGCGCCGTCGGGTCGATCGGCTGGCGTTCGGCC 27173
| |||||||||||| | | ||||||| || |||| | | ||| || || |
Sbjct 118 TGCTCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCGGTC---C 174
Query 27174 TT---CGTCGTGTCGGTGCGGCTCGCGATCGGACCGGATACCGACAGGCCGAGCTTTTCG 27230
|| ||||||||||||| || || | ||| ||||| || ||||||| ||| |||
Sbjct 175 TTGACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCG 234
Query 27231 CCTTCCAGCTCGGTCACGGGCAGGATGTTGATGCTCTTCAGGAATGCGCTCGATTCCTGC 27290
|||||| |||| |||| | | |||||| || || ||| | ||||||||||||
Sbjct 235 CCTTCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGC 294
Query 27291 ATTTTGGTTTCGAGCGTTTGCTGGACGGACGGCTCGACGGCGAATTTCTGCGAT--ACGT 27348
| || ||||| ||| ||||||||| ||| | ||| ||||| |||| | |||
Sbjct 295 ACCTTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATT--TGCGGTCAACGC 352
Query 27349 CGTCGGTGTCGTTCAGCTTGGCGATTT 27375
|| | ||||||| ||||||||||
Sbjct 353 GTTCAACGCCGTTCAGTTTGGCGATTT 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129649557813330
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