Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq1141 367 3e-97 >seq1141 Length=3271 Score = 367 bits (406), Expect = 3e-97 Identities = 616/882 (70%), Gaps = 21/882 (2%) Strand=Plus/Plus Query 28831 GCGTTCCGCGAATCACTGTTCGACTACCAGAAGGTCTGGTATCGAAACGGCGATCAGCAG 28890 |||||| | || ||| |||||||||||||| | |||||| |||| ||| |||| || Sbjct 2399 GCGTTCAGGGATTCAATGTTCGACTACCAGCGTGCCTGGTA-CGAAGCGGGTCTCAG-AG 2456 Query 28891 A-CG----CGCAATATCCTGAAGTCACGGCAGATCGGCGCCACCTGGTATTTCGCACGCG 28945 | || |||||| | |||||| || |||||||| ||||| |||||||||||||| | Sbjct 2457 AGCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGG 2516 Query 28946 AGGCATTCGTCGACGCGCTCGATACCGGCCGCAACCAGATTTTTCTATCGGCCAGCAAAG 29005 |||| ||| | || ||| | || || ||||| |||||||| | ||||||||||| | Sbjct 2517 AGGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGG 2576 Query 29006 CACAGGCGCACGTCTTCAAACAGTACATCGTGCAGTTCGCTCGTGACGTGGCCGACGTTG 29065 | ||||| ||||| ||||| || |||||| | |||||||| || | |||| ||| | Sbjct 2577 CGCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGG 2636 Query 29066 AGCTGACGGGCGATCCGATCATTCTGCCGAACGGTGCGACGCTGTACTTCCTAGGGACGA 29125 |||||| |||||| ||||| | |||||||||| ||||||||||| ||||| || || | Sbjct 2637 AGCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAA 2696 Query 29126 ACTCGCGCACCGCGCAGTCGTATCACGGCAATCTGTACTTCGACGAATATTTCTGGGTGC 29185 || | |||||||||||| ||||||||||| || || | ||||| || |||||| | | Sbjct 2697 ACGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCC 2756 Query 29186 CGAAGTTCCGCGAGCTGAATACCGTTGCGTCGGGCATGGCGATGCACAAACGCTGGCGGC 29245 | |||| |||||| | || || || || ||||| || ||| ||||||| Sbjct 2757 AGCGCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGGC 2816 Query 29246 TGACCTACTTCAGCACGCCGTCGAGTACGACCCATGAAGCCTACGCGTTCTGGAGCGGCG 29305 ||| || ||| ||||| ||||| |||| ||||| ||| |||||||| |||| Sbjct 2817 AGACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGCG 2876 Query 29306 CCGATG-CGAATCGTGGGCGCGCGCCTAGCGATCGTATCCAGATCGACACGAGCCACGAA 29364 || || ||||| ||||| | || | |||| | ||| |||||| Sbjct 2877 -CGCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCAC--- 2932 Query 29365 GCGCTCGTGC--GA-GGCATGCTGGGCGAGGACGAGCAGTGGCGTCAGATCGTCACCGTA 29421 ||| | ||| || ||| || | ||| ||||| |||||| ||||| ||||| || Sbjct 2933 GCGAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTG 2992 Query 29422 CTCGATGCGATCGAGGGCGGCTGCGACTTGTTCGACCTGGAGAGACTTCGGCGCCGGTAC 29481 || || |||| || |||||| || |||||||||| || | |||| |||| Sbjct 2993 GAAGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTAC 3052 Query 29482 AGTGCAGAGGCTTTCGCGAACCTGCTGATGTGCCAGTTCATCGACGATTCGGTGTCGGTG 29541 || | | || |||| |||||||||||||||| |||||||| || ||| || || Sbjct 3053 AGCGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTC 3112 Query 29542 TTCAAGCTGGCCGAGCTGCAGCGCTGCATGGTCGACTCGTGGGAGGAATGGGCCGACGAC 29601 ||| |||| | ||| |||| ||||||||||| ||||||| ||| || ||| Sbjct 3113 TTCCCGCTGTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGG---GAGGAC 3169 Query 29602 TTCTCGCNNNNNNNNNNNCGTCCGTTCGGCTATCGCGAGGTGTGGGTTGGCTACGATCCG 29661 ||| | || || ||||| |||| ||||| ||||| |||||||| ||| Sbjct 3170 TTCCGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCCG 3229 Query 29662 -GCGCTGAC--TGGCGACTCAGCCGGTCTCGTTGTCGTGGCG 29700 || | | ||||||| |||| || || ||||||||| Sbjct 3230 AACGGCGGCGGTGGCGACAGTGCCGCGCTGGTGGTCGTGGCG 3271 Score = 149 bits (164), Expect = 2e-31 Identities = 268/387 (69%), Gaps = 16/387 (4%) Strand=Plus/Plus Query 26997 ATGATCCGGTCGAGCGCAGACTGGTTG---AGGATCACATTGCGGATGCGTTGCTGGAAG 27053 ||||| || |||||||| |||| | ||||| | | ||| ||||| ||||||| Sbjct 1 ATGATGCGATCGAGCGC---CTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAG 57 Query 27054 TCGGGGAATTTCGCCCAGGCGTCGAGCTTGCGGTACGTAATGGCCGTGTCGTAGTCGGTT 27113 |||||||| |||||||| ||||| || |||| || ||| ||||| ||| ||| Sbjct 58 TCGGGGAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTC 117 Query 27114 TTCTCGCAGCGGTAGCGGTTGCTGTCCAGCGCCGTCGGGTCGATCGGCTGGCGTTCGGCC 27173 | |||||||||||| | | ||||||| || |||| | | ||| || || | Sbjct 118 TGCTCGCAGCGGTACTTGCGACCATCCAGCGTCGCAATGTCGCTGGTCTGCCGGTC---C 174 Query 27174 TT---CGTCGTGTCGGTGCGGCTCGCGATCGGACCGGATACCGACAGGCCGAGCTTTTCG 27230 || ||||||||||||| || || | ||| ||||| || ||||||| ||| ||| Sbjct 175 TTGACCGTCGTGTCGGTGGTGCCGGCCACCGGGCCGGACACGCCGAGGCCGATCTTCTCG 234 Query 27231 CCTTCCAGCTCGGTCACGGGCAGGATGTTGATGCTCTTCAGGAATGCGCTCGATTCCTGC 27290 |||||| |||| |||| | | |||||| || || ||| | |||||||||||| Sbjct 235 CCTTCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGC 294 Query 27291 ATTTTGGTTTCGAGCGTTTGCTGGACGGACGGCTCGACGGCGAATTTCTGCGAT--ACGT 27348 | || ||||| ||| ||||||||| ||| | ||| ||||| |||| | ||| Sbjct 295 ACCTTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATT--TGCGGTCAACGC 352 Query 27349 CGTCGGTGTCGTTCAGCTTGGCGATTT 27375 || | ||||||| |||||||||| Sbjct 353 GTTCAACGCCGTTCAGTTTGGCGATTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129649557813330