Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq1141 329 7e-86 >seq1141 Length=3271 Score = 329 bits (364), Expect = 7e-86 Identities = 547/779 (70%), Gaps = 11/779 (1%) Strand=Plus/Plus Query 25216 AGCGCACGCGCAACATTCTCAAGTCGCGGCAGATCGGCGCGACGTTCTATTTCGCACGCG 25275 |||| | ||||| |||| ||| || |||||||| || |||| ||||||||||| | Sbjct 2457 AGCGTATCCGCAATGTTCTGAAGAGCCGCCAGATCGGTGCCACGTGGTATTTCGCACGGG 2516 Query 25276 AGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCAGATTTTTCTATCGGCCAGCAAGG 25335 |||| | ||||| ||| || | |||||||||||||| | ||||||||||||| Sbjct 2517 AGGCCTTCATTGATGCGTTGACCACGGGGCGCAATCAGATTTTCTTGTCGGCCAGCAAGG 2576 Query 25336 CGCAGGCGCACGTTTTCAAGTCGTACATTCGGCAGTTTGCCGCCGAGGCCGCCGAGGTCG 25395 ||||||| |||||||||||| ||||| ||||| || || || |||| || | Sbjct 2577 CGCAGGCCCACGTTTTCAAGCAATACATCATCCAGTTCGCGAAGGATGCTGCCGGCGTGG 2636 Query 25396 AATTGACCGGCGACCCGATCATTTTGCCGAACATGGCAGAGTTGATTTTCCTCGGCACGA 25455 | ||| ||||| ||||| | ||||||||| || | || |||||||||||| | Sbjct 2637 AGCTGAAGGGCGAGCCGATGGTGTTGCCGAACGGCGCGACGCTGTATTTCCTCGGCACAA 2696 Query 25456 ATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGAGTATTTTTGGGT-G 25514 | | || || |||||||||||||||||||| ||||| | |||||||| || ||| | Sbjct 2697 ACGCACGCACCGCGCAGAGCTATCACGGCAACCTCTATCTGGACGAGTACTTCTGGATCC 2756 Query 25515 AGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCACAAGAAATGGCGA 25574 ||| | || | |||| |||||| || || || ||||| || ||| ||| ||||| Sbjct 2757 AGC-GCTTCCAAGAGCTGCGCAAGGTGGCCTCCGGGATGGCCATCCACTCGAAGTGGCGG 2815 Query 25575 AAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTACACCTTCTGGAGTGGC 25634 |||| ||||| || ||||| |||||| | | ||||| || ||| | |||||| |||| Sbjct 2816 CAGACTTATTTCTCGACGCCTTCGAGCCTTGCCCACGAAGCGTACCCGTTCTGGTCTGGC 2875 Query 25635 GAGCACTACAACAGGGGCCGCGCAAAGGCCGATCACATTCATCTCGATATTTCGCACTCG 25694 | || | ||| | || || |||| || ||||| | | || | ||| | Sbjct 2876 GCGCTGTTCAATCGCGGGCGGAAGAAGGAAGACCACATCCGCGTTGACGTCAGCCACGC- 2934 Query 25695 GCGCTCGCTCG-CGGCCGGCTCTGCGAGGATCGACAGTTTCGCCAGATCGTGACGGTCGA 25753 | || || | |||||||| |||| ||| | |||| ||||| || ||||| || Sbjct 2935 GAACTTGCAGGACGGCCGGCGGTGCGCGGACGGTCAGTGGAAACAGATTGTCACGGTGGA 2994 Query 25754 GGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATATCGACGAGCTGCGCCTTGAATACAG 25813 || ||| ||||||| || ||| || ||||||| ||||| || |||| || || ||||| Sbjct 2995 AGACGCCATCGCCGGTGGCTGCAACCTGTTCGACCTCGACCAGTTGCGGCTGGAGTACAG 3054 Query 25814 CGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTTTATCGACGATACCGCGTCGATCTT 25873 || ||| | || ||| ||| ||||||| || ||||| || || || || |||| Sbjct 3055 CGATGCGGACTTCGAGAACCTGCTGATGTGCGGCTTCATCGATGACACGGCCTCTGTCTT 3114 Query 25874 TCCGCTCGCCGA-GCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCCGACGATT 25932 ||||| | ||| ||| ||| ||||||||||| ||||| | ||| || || | Sbjct 3115 CCCGCT-GTCGATGCTCATGCGCGGCATGGTCGACAGCTGGGAGGTGTGG---GAGGACT 3170 Query 25933 TCAAGCCGCTCG-CGCCCCGCCCTTTCGGGTTCCGGCCGGTATGGGTTGGCTACGATCC 25990 || ||| | | |||||||||||||||| || ||||||||| |||||||| || Sbjct 3171 TC-CGCCATTGGTCGCCCCGCCCTTTCGGTAATCGTGAGGTATGGGTGGGCTACGACCC 3228 Score = 174 bits (192), Expect = 3e-39 Identities = 273/382 (71%), Gaps = 14/382 (4%) Strand=Plus/Plus Query 23078 GATGCGGTCGAGCGCTTGACGGCGCACGATCACGTCGCGAATGCGGGTCTGGAAGTCGGG 23137 |||||| |||||||| || ||||||| ||| ||||||||||||| |||||||||||||| Sbjct 3 GATGCGATCGAGCGCCTGGCGGCGCAGGATGGCGTCGCGAATGCGCGTCTGGAAGTCGGG 62 Query 23138 AAACTTCGCCCACGCGTCGAGCAGCGCATACGTGATGTGCGAGTCGAAATTCGTTTGCGT 23197 ||||||||||||||||| || || || |||||||| | ||| | || || ||| Sbjct 63 GAACTTCGCCCACGCGTCAAGGCGCTGGTAGGTGATGTGGGTGTCCGAGTTGGTCTGCTC 122 Query 23198 GCAGTTGTAACCGTTCTCGTCGAG-GTCGGTCACATCAGCCGT-TGCGCGATCCTTCTGC 23255 |||| ||| | | || || ||| | | || || ||| || ||||| | Sbjct 123 GCAGCGGTACTTGCGACCATCCAGCGTC-GCAATGTCGCTGGTCTGC-CGGTCCTTGACC 180 Query 23256 GTCGTGTCGGTCGTGCTCGCGATCGGCGAGCCG---ACGCCGAGGCCGAGCTTTGCGCCT 23312 ||||||||||| |||| || | ||| |||| ||||||||||||| ||| ||||| Sbjct 181 GTCGTGTCGGTGGTGCCGGCCACCGG---GCCGGACACGCCGAGGCCGATCTTCTCGCCT 237 Query 23313 TCCTTGTCGGTCACGCCGATAACGTTGATGCGTTTCAGAAAGTCGCTCGATTCCTGAATG 23372 |||| || |||||| ||||||||| | | ||||| || ||||||||||| | Sbjct 238 TCCTGCTCCAGCACGCCATGAACGTTGATCTGCTGGAGAAATTCACTCGATTCCTGCACC 297 Query 23373 CGGGTTTCGAGCTTTTGTTGCACGCTCGGCGACACGGCGAATTT--CTTCGTCGCGTTCG 23430 ||||| ||| || || |||||||| |||| |||||| || ||||||| Sbjct 298 TTCGTTTCCAGCCGCTGCTGGACGCTCGGTTGCACGCTGAATTTGCGGTCAACGCGTTC- 356 Query 23431 GGATGCCGTTGAGCTTGGCGAT 23452 | |||||| || |||||||| Sbjct 357 -AACGCCGTTCAGTTTGGCGAT 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103288942336710