Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16]
3,145 sequences; 823,786,402 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq7 107 1e-18
seq1 96.9 2e-15
seq11 93.3 3e-14
seq10 82.4 5e-11
>seq7
Length=68045021
Score = 107 bits (118), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||| ||| | |||||||| | || || || || |||||||||||||
Sbjct 66407257 TTCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTATAGTCCG 66407198
Query 34813 --AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870
|||| | || |||| || ||||| || || ||||| || | | ||||||||| |
Sbjct 66407197 CCAAAG--TGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGG 66407140
Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930
|| | ||||||||||| ||||| ||||| | || | || | |||
Sbjct 66407139 GGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTC 66407080
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | ||| |||||||| || || || |||||||||||||| ||||||
Sbjct 66407079 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAGATTTGCATA 66407028
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | ||| || ||||| ||||| ||||| | ||| | || |||| |||
Sbjct 66406553 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 66406494
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| ||||| ||||| || | | ||||||||| | || | || ||||| ||
Sbjct 66406493 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 66406434
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | || || || | ||| || || ||
Sbjct 66406433 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 66406374
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||||||||||||||| ||||||||||||
Sbjct 66406373 CCCGTGAGAGTCTTCACGAAGATCTGCATA 66406344
>seq1
Length=98543444
Score = 96.9 bits (106), Expect = 2e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
||||||||||||| || || | || | ||| |||| || ||||| |||||||| || |
Sbjct 87380390 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 87380331
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| | ||| |||||||| | || | || |||||||| |||||| ||||||
Sbjct 87380330 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 87380271
Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971
| || | || | | ||||| || | || || || || ||||| ||||| ||||| |
Sbjct 87380270 CAATAGTGTCGCTCGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 87380211
Query 34972 AGATCTGCATATT 34984
|||||||||| ||
Sbjct 87380210 AGATCTGCATTTT 87380198
Score = 95.1 bits (104), Expect = 8e-15
Identities = 143/201 (71%), Gaps = 8/201 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| ||
Sbjct 57604298 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 57604239
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||||||| | || | ||| |||||||| ||||| ||| || ||
Sbjct 57604238 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTCAC--AT 57604181
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | |||||| || | ||| || || || ||||| || || ||
Sbjct 57604180 --TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 57604123
Query 34967 CACAAAGATCTGCATATTCGT 34987
||| ||||||||||| |||||
Sbjct 57604122 CACGAAGATCTGCATCTTCGT 57604102
>seq11
Length=56302525
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||||||||| | |||| | || |||| || ||||| || || |||||
Sbjct 497891 TCTTTCTGGATGTTATAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAG 497832
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | || || ||| | || | ||| |||||||| ||||| ||| ||
Sbjct 497831 ATGAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 497772
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || || || || || || ||||||||||||
Sbjct 497771 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTAAGAGTCTTCACA 497712
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 497711 AAGATCTGCAT 497701
>seq10
Length=65527505
Score = 82.4 bits (90), Expect = 5e-11
Identities = 92/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805
||||| |||||||||| | ||||| ||| | ||||| || |||||||||||||||
Sbjct 463792 ATCATGGTTCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTG 463851
Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865
|| || | ||| ||| |||| |||| |||||||| ||||| || |||| |||||
Sbjct 463852 TAATCAGCCAGGGTTCTACCATCTTCCAATTGTTTTCCAGCAAAAATCAGTCTCTGCTGA 463911
Query 34866 TC 34867
||
Sbjct 463912 TC 463913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324621156895560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |