Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20lycopersicum_20[refseq_20GCF_5F000188115.3_202014-10-16] 3,145 sequences; 823,786,402 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq4 105 8e-18 >seq2 Length=55340444 Score = 138 bits (152), Expect = 1e-27 Identities = 559/874 (64%), Gaps = 9/874 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | ||| || Sbjct 54782079 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 54782020 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| |||| |||||||| | |||| || || || | | || || | | Sbjct 54782019 CTCCATCCAATCGAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 54781960 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | ||| || |||||||| | || ||| | |||||| ||| | ||||||||| | | Sbjct 54781959 CAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCTCCATTCATTCCCACCAG 54781900 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| | ||| Sbjct 54781899 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 54781840 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| |||| || ||| | | | |||| |||||| || Sbjct 54781839 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAAC-TGTAAAG--CAAACACGC 54781783 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| || | || |||||||| || || ||||| || || ||||| ||||| Sbjct 54781782 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 54781723 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| | || | |||||| ||||| ||||| ||| || ||| ||||| || || Sbjct 54781722 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 54781663 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || |||||||| || | | |||| | || || || ||||| Sbjct 54781662 TTCAACACAAGCAAAAGCCACCAAAC--GCTCCGCGA-AAGTTTCGGACCCATCGATCCA 54781606 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | |||||||||| ||||| || |||||||| || | | || | Sbjct 54781605 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATTGCACGGAACAA 54781546 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || | ||| || | || | || | || ||||||||||| || || Sbjct 54781545 TTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTACATCTCGGA 54781486 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| ||||| || || || || || || || || ||| | || || | | ||| || Sbjct 54781485 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGAGCCTCGGCAACCTGGAC 54781426 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | || ||| | | | || || ||| || || || || |||||||| Sbjct 54781425 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 54781366 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| | || ||||| ||||| | || |||| | | ||| | | | | Sbjct 54781365 GGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAGT 54781306 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| | || | ||| |||||||| | ||||| ||||| ||| ||||| || ||||| Sbjct 54781305 ATCGGTGGAGAGATCGACTTCTTCTGCCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 54781246 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | |||| || || || || ||| Sbjct 54781245 TTCCCAAATCTGTGGATACTGAATTGGGAACATA 54781212 >seq4 Length=66470942 Score = 105 bits (116), Expect = 8e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 50409318 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 50409259 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | || ||||| || |||||| || || || || | |||||| | ||| | Sbjct 50409258 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 50409199 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| || ||||| ||||| || | || || ||||| || || |||| | Sbjct 50409198 CATATGTTGTGGCCTTTCCACAATCTTTCCCTGAATCTTTAAAAGGTAAGACCTTTCAAG 50409139 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 50409138 GGTTTTGAAACCAAAGTA 50409121 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 50409738 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 50409679 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 50409678 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 50409619 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAA 48536 | || || || || || ||| || | |||||| ||| |||| |||||||| Sbjct 50409618 TACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCG--TAAGAGTATCATAT 50409561 Query 48537 ATTCCTTCTATACTATCATCTATCAT 48562 || || || || ||||||||| |||| Sbjct 50409560 ATGCCCTCAATGCTATCATCTTTCAT 50409535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||||| ||||| | ||| | || | || ||| || | ||| || Sbjct 4387790 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAATAATTCC 4387849 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | ||||| ||||| ||||||||| ||| | | | ||||| | || Sbjct 4387850 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTGCCACGAATATTGTGCACAGA 4387909 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | ||||||| ||||| || ||||| || Sbjct 4387910 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 4387969 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 4387970 GCCCTCAATACTATCATCTTTCAT 4387993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086702097800